BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0127.p         (175 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF1040 [NT] COG0643 Chemotaxis protein histidine kinase and rela...   114   1e-25
PA0413_2 [NT] COG0643 Chemotaxis protein histidine kinase and re...   107   2e-23
PH0484 [NT] COG0643 Chemotaxis protein histidine kinase and rela...   105   3e-23
TM0702 [NT] COG0643 Chemotaxis protein histidine kinase and rela...   105   5e-23
PA1458 [NT] COG0643 Chemotaxis protein histidine kinase and rela...   105   7e-23

>AF1040 [NT] COG0643 Chemotaxis protein histidine kinase and related
           kinases Afu Archaeoglobus fulgidus
          Length = 656

 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 93/146 (63%), Gaps = 8/146 (5%)

Query: 1   MHLIRNAMDHGLESSEERLAKGKPEAGVIKLEMGVMEDMFQMALSDDGRGLALERVRQIG 60
           +HL+RNA+DHG+E+ EER+A GK E G IKL     ++   + L DDGRGL +E+++Q  
Sbjct: 384 VHLVRNAVDHGIETPEERVAAGKDEVGRIKLAAWREKNNIIIELEDDGRGLDVEKIKQKA 443

Query: 61  IEKHLITVDQA--LSDAEIARLILQPGFSTRSEVTEVSGRGVGMDAVLDFVTREHGQIEI 118
           IEK +++  +A  +S+ EI  LI  PGFST+ E TEVSGRGVGMD V   V R  G + I
Sbjct: 444 IEKGIVSPAEADSMSEDEIKMLIFSPGFSTKDEATEVSGRGVGMDVVKTTVERLGGSVRI 503

Query: 119 RFTDTEEGAPFRSFQIIVMLPENVAV 144
               +E+G   R   I + LP  VA+
Sbjct: 504 ---SSEKGNGTR---IRIHLPPTVAI 523


>PA0413_2 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases
            Pae Pseudomonas aeruginosa
          Length = 1468

 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/143 (43%), Positives = 89/143 (62%), Gaps = 6/143 (4%)

Query: 2    HLIRNAMDHGLESSEERLAKGKPEAGVIKLEMGVMEDMFQMALSDDGRGLALERVRQIGI 61
            H++RNA+DHG+ES E R A GKPE G I+L +G       + LSDDG G+ L+ VR+  I
Sbjct: 1172 HMLRNAVDHGIESGETRRAAGKPEHGTIRLNIGREGGDILLTLSDDGAGIRLDAVRRKAI 1231

Query: 62   EKHLITVDQALSDAEIARLILQPGFSTRSEVTEVSGRGVGMDAVLDFVTREHGQIEIRFT 121
            E+ L++ D  LSD E+ + +L+ GFST  +VT++SGRGVG+D     V +  G + I+ T
Sbjct: 1232 ERGLMSADSDLSDHEVLQFVLESGFSTAEKVTQISGRGVGLDVANSEVKQLGGSVSIQ-T 1290

Query: 122  DTEEGAPFRSFQIIVMLPENVAV 144
            +  +G  F      V LP  V+V
Sbjct: 1291 EPGQGTRFN-----VRLPFTVSV 1308


>PH0484 [NT] COG0643 Chemotaxis protein histidine kinase and related
           kinases Pho Pyrococcus horikoshii
          Length = 766

 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 94/146 (64%), Gaps = 8/146 (5%)

Query: 1   MHLIRNAMDHGLESSEERLAKGKPEAGVIKLEMGVMEDMFQMALSDDGRGLALERVRQIG 60
           +HL+RNA+DHG+E  EER+  GKP AG ++L     ++   + + DDGRG+  E+V++  
Sbjct: 494 VHLLRNAVDHGIEPPEERVKLGKPRAGRVELIAKREKNHVVIIVRDDGRGIDPEKVKRKA 553

Query: 61  IEKHLITVDQA--LSDAEIARLILQPGFSTRSEVTEVSGRGVGMDAVLDFVTREHGQIEI 118
           +E+ LIT ++A  LSD E   LI  PGFST  +VT+VSGRGVGMD V + V   +G I +
Sbjct: 554 VERGLITPEEAANLSDEEAINLIFLPGFSTADKVTDVSGRGVGMDVVKEVVKSMNGSISV 613

Query: 119 RFTDTEEGAPFRSFQIIVMLPENVAV 144
           + T+  +G  F     I+ LP ++A+
Sbjct: 614 Q-TEVGKGTTF-----ILKLPISMAI 633


>TM0702 [NT] COG0643 Chemotaxis protein histidine kinase and related
           kinases Tma Thermotoga maritima
          Length = 671

 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 97/172 (56%), Gaps = 14/172 (8%)

Query: 1   MHLIRNAMDHGLESSEERLAKGKPEAGVIKLEMGVMEDMFQMALSDDGRGLALERVRQIG 60
           +HL+RNA+DHG+E  EER+AKGKP  G + L      +   + + DDGRG+  E++ +  
Sbjct: 404 LHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKA 463

Query: 61  IEKHLITVDQA--LSDAEIARLILQPGFSTRSEVTEVSGRGVGMDAVLDFVTREHGQIEI 118
           IEK LI   +A  LSD EI   +  PGFST+ +V+EVSGRGVGMD V + V   +G I I
Sbjct: 464 IEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSISI 523

Query: 119 RFTDTEEGAPFRSFQIIVMLPENVA------VEVDGIDVPYPMGGQETLQPV 164
                 E    +  ++ + LP  +A      V+V+ +    P+   +T+  +
Sbjct: 524 ------ESEKDKGTKVTIRLPLTLAIIQALLVKVNNLVYAIPIANIDTILSI 569


>PA1458 [NT] COG0643 Chemotaxis protein histidine kinase and related
           kinases Pae Pseudomonas aeruginosa
          Length = 753

 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 91/146 (62%), Gaps = 8/146 (5%)

Query: 1   MHLIRNAMDHGLESSEERLAKGKPEAGVIKLEMGVMEDMFQMALSDDGRGLALERVRQIG 60
           +HL+RNA+DHG+ES EER A GKP  G + L      D   + ++DDG+G+  E +R   
Sbjct: 478 VHLVRNAVDHGIESPEEREAAGKPRVGQVVLSAEQEGDHILLMITDDGKGMDAEVLRNKA 537

Query: 61  IEKHLITVDQA--LSDAEIARLILQPGFSTRSEVTEVSGRGVGMDAVLDFVTREHGQIEI 118
           +EK L+  D A  L+D E   LI  PGFST++E+++VSGRGVGMD V   +++ +G + +
Sbjct: 538 VEKGLLERDAADRLTDLECYNLIFAPGFSTKTEISDVSGRGVGMDVVKTKISQLNGTVNV 597

Query: 119 RFTDTEEGAPFRSFQIIVMLPENVAV 144
            F+    G+     +I++ +P  +A+
Sbjct: 598 -FSQKGSGS-----KIVIKVPLTLAI 617