BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0114.p         (197 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb21488 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases...   268   7e-72
CC1772 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, ...   263   2e-70
AGc227 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, ...   261   6e-70
mlr6847 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases,...   244   9e-65
cyoB [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, su...   232   5e-61

>SMb21488 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1
           Sme Sinorhizobium meliloti
          Length = 669

 Score =  268 bits (684), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 148/165 (89%)

Query: 1   MSDNFDLIKLIFGRLSLEAIPYHEPILIGTFAMVALGGIVVLGLLTKYRLWGMLWRDWFT 60
           M  + D +KLIFGRL+L+AIPYHEPIL+ TF  VALGGI ++GL+T YR WG LWRDW T
Sbjct: 1   MFSDPDFLKLIFGRLTLDAIPYHEPILVVTFLAVALGGIALIGLITYYRFWGTLWRDWLT 60

Query: 61  SIDHKRIGIMYIVLAIVMLLRGFADAVMMRAQQAIAFGDNAGFLPPHHYDQVFTAHGVIM 120
           S+DHK+IGIMYI+LA+VMLLRGF+DA+MMR QQA+AFG + G+LPPHHYDQVFTAHGVIM
Sbjct: 61  SVDHKKIGIMYIILALVMLLRGFSDAIMMRLQQAMAFGGSEGYLPPHHYDQVFTAHGVIM 120

Query: 121 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGALL 165
           IFF+AMP VTGLMN+VVPLQIGARDV+FPFLNNFSFWMTT GA++
Sbjct: 121 IFFMAMPFVTGLMNFVVPLQIGARDVSFPFLNNFSFWMTTAGAII 165


>CC1772 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1
           Ccr Caulobacter vibrioides
          Length = 665

 Score =  263 bits (672), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/165 (75%), Positives = 147/165 (89%)

Query: 6   DLIKLIFGRLSLEAIPYHEPILIGTFAMVALGGIVVLGLLTKYRLWGMLWRDWFTSIDHK 65
           DL++ IFGRL+ +AIP H+PIL+ TFA+VALGG+ VL LLT+Y+LWG LWR+W TS+DHK
Sbjct: 4   DLVQFIFGRLTWDAIPLHDPILLVTFAVVALGGVTVLALLTRYKLWGYLWREWLTSVDHK 63

Query: 66  RIGIMYIVLAIVMLLRGFADAVMMRAQQAIAFGDNAGFLPPHHYDQVFTAHGVIMIFFVA 125
           +IG+MYI+LA++MLLRGFADA+MMRAQQA+AFGD  G+LPP HYDQ+FTAHGVIMIFFVA
Sbjct: 64  KIGVMYIILALIMLLRGFADALMMRAQQAMAFGDATGYLPPEHYDQIFTAHGVIMIFFVA 123

Query: 126 MPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGALLXPEQL 170
           MPLVTGLMN VVPLQIGARDV+FPFLNNFSFWMT  GA+L    L
Sbjct: 124 MPLVTGLMNLVVPLQIGARDVSFPFLNNFSFWMTVGGAVLVMASL 168


>AGc227 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1
           Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 667

 Score =  261 bits (668), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 122/162 (75%), Positives = 144/162 (88%)

Query: 4   NFDLIKLIFGRLSLEAIPYHEPILIGTFAMVALGGIVVLGLLTKYRLWGMLWRDWFTSID 63
           N D    +FG+L+ E+IP HEPIL+ TFA VALGGIVV+G LT +RLWG LW +WFTSID
Sbjct: 4   NSDQTSFLFGKLTWESIPLHEPILVATFAAVALGGIVVVGALTYFRLWGYLWNEWFTSID 63

Query: 64  HKRIGIMYIVLAIVMLLRGFADAVMMRAQQAIAFGDNAGFLPPHHYDQVFTAHGVIMIFF 123
           HK+IGIMYI+LA+VMLLRGFADA+MMR QQAIA G + G+LPPHHYDQ+FTAHGVIMIFF
Sbjct: 64  HKKIGIMYIILALVMLLRGFADAIMMRVQQAIASGGSEGYLPPHHYDQIFTAHGVIMIFF 123

Query: 124 VAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGALL 165
           +AMP++TGLMN+VVPLQIGARDV+FPFLNNFSFWMTT GA++
Sbjct: 124 MAMPMITGLMNFVVPLQIGARDVSFPFLNNFSFWMTTAGAII 165


>mlr6847 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1
           Mlo Mesorhizobium loti
          Length = 665

 Score =  244 bits (623), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 114/165 (69%), Positives = 139/165 (84%)

Query: 6   DLIKLIFGRLSLEAIPYHEPILIGTFAMVALGGIVVLGLLTKYRLWGMLWRDWFTSIDHK 65
            L K IFGRL+ +++P HEPI++ TF  VALGGI +LG++T ++LW  LWR+WFTS+DHK
Sbjct: 4   TLTKFIFGRLTWDSLPLHEPIVVATFVAVALGGIALLGVVTYFKLWTYLWREWFTSVDHK 63

Query: 66  RIGIMYIVLAIVMLLRGFADAVMMRAQQAIAFGDNAGFLPPHHYDQVFTAHGVIMIFFVA 125
           +IGIMY+VL +VMLLRGF+DA+MMR QQA+AF  + G+L  HHYDQ+FTAHGVIMIFFVA
Sbjct: 64  KIGIMYMVLGLVMLLRGFSDAIMMRLQQAMAFNGSEGYLNSHHYDQIFTAHGVIMIFFVA 123

Query: 126 MPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGALLXPEQL 170
           MP VTGLMN+VVPLQIGARDV+FPFLNNFSFWMT  GA+L    L
Sbjct: 124 MPFVTGLMNFVVPLQIGARDVSFPFLNNFSFWMTVGGAILVMASL 168


>cyoB [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1
           Eco Escherichia coli K12
          Length = 663

 Score =  232 bits (591), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 109/160 (68%), Positives = 133/160 (83%)

Query: 11  IFGRLSLEAIPYHEPILIGTFAMVALGGIVVLGLLTKYRLWGMLWRDWFTSIDHKRIGIM 70
           +FG+LSL+A+P+HEPI++ T A + LGG+ ++GL+T +  W  LW++W TS+DHKR+GIM
Sbjct: 1   MFGKLSLDAVPFHEPIVMVTIAGIILGGLALVGLITYFGKWTYLWKEWLTSVDHKRLGIM 60

Query: 71  YIVLAIVMLLRGFADAVMMRAQQAIAFGDNAGFLPPHHYDQVFTAHGVIMIFFVAMPLVT 130
           YI++AIVMLLRGFADA+MMR+QQA+A    AGFLPPHHYDQ+FTAHGVIMIFFVAMP V 
Sbjct: 61  YIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVI 120

Query: 131 GLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGALLXPEQL 170
           GLMN VVPLQIGARDVAFPFLNN SFW T  G +L    L
Sbjct: 121 GLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSL 160