BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0113.p (471 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC1772 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, ... 791 0.0 mlr6847 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases,... 768 0.0 AGc227 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, ... 760 0.0 SMb21488 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases... 737 0.0 BMEI1900 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases... 671 0.0 >CC1772 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 Ccr Caulobacter vibrioides Length = 665 Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/469 (81%), Positives = 420/469 (89%) Query: 1 VDYYIWALQVAGVGTLLSGINLVVTIVKMRAPGMNMMKMPVFTWTSLCTNVLIVAAFPVL 60 VDYYIWALQ+AGVGTLLSGINLVVTIVKMRAPGM++MKMPVFTWT+LCTNVLIVAAFP+L Sbjct: 195 VDYYIWALQIAGVGTLLSGINLVVTIVKMRAPGMSLMKMPVFTWTALCTNVLIVAAFPIL 254 Query: 61 TAVLAMLSLDRVFGTNFFTNDMGGNAMMYVNLIWIWGHPEVYILVLPAFGIFSEIVSTFS 120 TAVL +LS DR GTNFFTND GGN MMYVNLIWIWGHPEVYIL+LPAFG+FSE+VSTF Sbjct: 255 TAVLGLLSADRYLGTNFFTNDFGGNPMMYVNLIWIWGHPEVYILILPAFGVFSEVVSTFC 314 Query: 121 GKRLFGYTSMVYATVVITILSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNW 180 KRLFGY+SMVYATVVIT+LSY+VWLHHFFTMGSGASVN+FFGITTMIISIPTGAKIFNW Sbjct: 315 RKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGASVNAFFGITTMIISIPTGAKIFNW 374 Query: 181 LFTMYRGRIRFEVPMLWTIGFMVTFVIGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIG 240 LFTMYRGRIRFEVPMLWT+GFMVTFVIGGMTGVLLA+PPADFVLHNSLFLIAHFHNVIIG Sbjct: 375 LFTMYRGRIRFEVPMLWTVGFMVTFVIGGMTGVLLAIPPADFVLHNSLFLIAHFHNVIIG 434 Query: 241 GVVFGMFAGINFWFPKAFGFKLNEFWGKCSFWFWLVGFYLAFMPLYVLGLMGVTRRMSHF 300 GVVFGMFAGI +WFPKAFGF+L+ FWGK SFWFWL GFY AFMPLYVLGLMGVTRR+SHF Sbjct: 435 GVVFGMFAGIVYWFPKAFGFRLDPFWGKLSFWFWLSGFYFAFMPLYVLGLMGVTRRVSHF 494 Query: 301 DDPSLQIWFVVAAIGAGLIALGIGSFIIQIAVSIRDRKKLADVTGDPWNGRTLEWSTSSP 360 +DPSLQIWFV+AA GA LI LGI +FI+QI VSIR+R+ L D TGDPW+GRTLEWSTSSP Sbjct: 495 EDPSLQIWFVIAAFGAVLILLGIIAFIVQIVVSIRNREALRDETGDPWDGRTLEWSTSSP 554 Query: 361 PPAYNFAFTPVVHDNDAWADMKKNKYQRPLGDFVEIHMPKNTGAGFIIAALSAVLGFTLI 420 PPAYNFAFTP+VHD DAW DMK+ Y RP F+ IHMP NTGAG ++A LS V GF +I Sbjct: 555 PPAYNFAFTPMVHDLDAWWDMKQRGYVRPTSGFIPIHMPANTGAGVVLAGLSVVCGFAMI 614 Query: 421 WHMWLPAVATFVVLVAATIIHTFNYNRDYYIPADEVVRVEAERTRLLNS 469 WH+W AV +F+ LV A I HTFN+ RDYYIPA+EVVRVE RT L S Sbjct: 615 WHIWWLAVLSFIALVGAAIAHTFNFKRDYYIPAEEVVRVEDARTEALRS 663 >mlr6847 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 Mlo Mesorhizobium loti Length = 665 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/470 (79%), Positives = 412/470 (87%) Query: 1 VDYYIWALQVAGVGTLLSGINLVVTIVKMRAPGMNMMKMPVFTWTSLCTNVLIVAAFPVL 60 VDYYIWALQVAGVGT LSGINL+ TI+KMRAPGM MM+MPVFTWTSLCTNVLIVA+FPVL Sbjct: 195 VDYYIWALQVAGVGTTLSGINLICTIIKMRAPGMTMMRMPVFTWTSLCTNVLIVASFPVL 254 Query: 61 TAVLAMLSLDRVFGTNFFTNDMGGNAMMYVNLIWIWGHPEVYILVLPAFGIFSEIVSTFS 120 TAVL++L+LDR GTNFFTND GGN MMYVNLIWIWGHPEVYIL+LP FG+FSE+ STFS Sbjct: 255 TAVLSLLALDRYVGTNFFTNDFGGNPMMYVNLIWIWGHPEVYILILPLFGVFSEVTSTFS 314 Query: 121 GKRLFGYTSMVYATVVITILSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNW 180 GKRLFGYTSMVYATVVITILSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNW Sbjct: 315 GKRLFGYTSMVYATVVITILSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNW 374 Query: 181 LFTMYRGRIRFEVPMLWTIGFMVTFVIGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIG 240 LFTMYRGRIRFE+PM+WT+ FM+TFV+GGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIG Sbjct: 375 LFTMYRGRIRFELPMMWTMAFMLTFVVGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIG 434 Query: 241 GVVFGMFAGINFWFPKAFGFKLNEFWGKCSFWFWLVGFYLAFMPLYVLGLMGVTRRMSHF 300 GV+FG+FAGI +W+PKAFGFKL+ FWGK SFW W+VGF+ AFMPLY+LGLMGVTRRM F Sbjct: 435 GVLFGLFAGIAYWWPKAFGFKLDPFWGKVSFWCWVVGFWFAFMPLYILGLMGVTRRMRVF 494 Query: 301 DDPSLQIWFVVAAIGAGLIALGIGSFIIQIAVSIRDRKKLADVTGDPWNGRTLEWSTSSP 360 DDPSLQIWFV+AA GA LIA GI +F+IQI VSIR R+ L D TGDPW+GRTLEWSTSSP Sbjct: 495 DDPSLQIWFVIAAFGAVLIAFGIAAFLIQIFVSIRKREALTDPTGDPWDGRTLEWSTSSP 554 Query: 361 PPAYNFAFTPVVHDNDAWADMKKNKYQRPLGDFVEIHMPKNTGAGFIIAALSAVLGFTLI 420 PPAYNFAFTPVV DNDAW DMKK Y RPL F IHMP NTG G I+AA S LGF LI Sbjct: 555 PPAYNFAFTPVVRDNDAWWDMKKAGYTRPLSGFKPIHMPSNTGTGVILAAFSVALGFGLI 614 Query: 421 WHMWLPAVATFVVLVAATIIHTFNYNRDYYIPADEVVRVEAERTRLLNSH 470 W++W A +FV L+A I HTFNY+RD++IPA EV + E RT LL + Sbjct: 615 WYIWWLAALSFVCLIATAIGHTFNYHRDFHIPAAEVTQTEVARTTLLAAQ 664 >AGc227 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 667 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/470 (78%), Positives = 416/470 (88%) Query: 1 VDYYIWALQVAGVGTLLSGINLVVTIVKMRAPGMNMMKMPVFTWTSLCTNVLIVAAFPVL 60 VDYYIW LQ+AGVGT LSGINL+VTI+KMRAPGM MM+MP+F WTSLC+N+LIVA+FP+L Sbjct: 197 VDYYIWGLQIAGVGTTLSGINLIVTIIKMRAPGMTMMRMPIFVWTSLCSNILIVASFPIL 256 Query: 61 TAVLAMLSLDRVFGTNFFTNDMGGNAMMYVNLIWIWGHPEVYILVLPAFGIFSEIVSTFS 120 TA LA+L+LDR GTNFFTND+GGN MMYVNLIWIWGHPEVYILVLPAFGIFSEIV+TFS Sbjct: 257 TATLALLTLDRYAGTNFFTNDLGGNPMMYVNLIWIWGHPEVYILVLPAFGIFSEIVATFS 316 Query: 121 GKRLFGYTSMVYATVVITILSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNW 180 GKRLFGY SMVYAT VITILSYLVWLHHFFTMGSGA+VN+FFGITTMIISIPTGAKIFNW Sbjct: 317 GKRLFGYASMVYATAVITILSYLVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNW 376 Query: 181 LFTMYRGRIRFEVPMLWTIGFMVTFVIGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIG 240 LFTMY+GRI+F+VPMLWTIGFM+TFVIGGMTGVLLAVPPADFVLHNSLFLIAHFHN IIG Sbjct: 377 LFTMYKGRIKFDVPMLWTIGFMITFVIGGMTGVLLAVPPADFVLHNSLFLIAHFHNTIIG 436 Query: 241 GVVFGMFAGINFWFPKAFGFKLNEFWGKCSFWFWLVGFYLAFMPLYVLGLMGVTRRMSHF 300 GVVFG+ AGI +WFPKAFG++L+ FWGK SFWFW +GFY AFMPLY+LGLMG+TRR+S F Sbjct: 437 GVVFGVLAGIVYWFPKAFGYRLDPFWGKLSFWFWFIGFYFAFMPLYILGLMGITRRISQF 496 Query: 301 DDPSLQIWFVVAAIGAGLIALGIGSFIIQIAVSIRDRKKLADVTGDPWNGRTLEWSTSSP 360 +D SLQIWFV+AA GA LIALGI SFIIQ+ VS R +L DVTGDP+N RTLEWSTSSP Sbjct: 497 EDNSLQIWFVIAAFGAFLIALGIASFIIQLIVSFLKRDQLRDVTGDPYNARTLEWSTSSP 556 Query: 361 PPAYNFAFTPVVHDNDAWADMKKNKYQRPLGDFVEIHMPKNTGAGFIIAALSAVLGFTLI 420 PP YNFAFTPV+HD DAW DMKK Y RPL F+ IHMPKNTGAG II+A+S VLGF L+ Sbjct: 557 PPQYNFAFTPVIHDVDAWHDMKKRGYSRPLDGFIPIHMPKNTGAGVIISAISVVLGFALV 616 Query: 421 WHMWLPAVATFVVLVAATIIHTFNYNRDYYIPADEVVRVEAERTRLLNSH 470 WH+W A +F+ ++A +I HTFNYNRDYYIPA +V VEAERT+LL Sbjct: 617 WHIWWLAALSFIGVIAVSIAHTFNYNRDYYIPASDVSTVEAERTKLLAKQ 666 >SMb21488 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 Sme Sinorhizobium meliloti Length = 669 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/471 (76%), Positives = 407/471 (86%) Query: 1 VDYYIWALQVAGVGTLLSGINLVVTIVKMRAPGMNMMKMPVFTWTSLCTNVLIVAAFPVL 60 VDYY+W LQ+AG+GT LSGINL+ TIVKMRAPGM MMKMPVFTWTSLCTNVLIVA FPVL Sbjct: 197 VDYYVWGLQIAGIGTTLSGINLIATIVKMRAPGMTMMKMPVFTWTSLCTNVLIVATFPVL 256 Query: 61 TAVLAMLSLDRVFGTNFFTNDMGGNAMMYVNLIWIWGHPEVYILVLPAFGIFSEIVSTFS 120 TA LA+L+LDR GTNFFTND+GGN MMYVNLIWIWGHPEVYIL+LPAFGIFSE+V+TF Sbjct: 257 TATLALLTLDRYAGTNFFTNDLGGNPMMYVNLIWIWGHPEVYILILPAFGIFSEVVATFC 316 Query: 121 GKRLFGYTSMVYATVVITILSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNW 180 GKRLFGY SMVYATVVITILSY+VWLHHFFTMGSGASVN+FFGITTMIISIPTGAK+FNW Sbjct: 317 GKRLFGYASMVYATVVITILSYIVWLHHFFTMGSGASVNAFFGITTMIISIPTGAKMFNW 376 Query: 181 LFTMYRGRIRFEVPMLWTIGFMVTFVIGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIG 240 LFTMYRGRIR+EVPMLWTIGFMVTFV+GGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIG Sbjct: 377 LFTMYRGRIRYEVPMLWTIGFMVTFVLGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIG 436 Query: 241 GVVFGMFAGINFWFPKAFGFKLNEFWGKCSFWFWLVGFYLAFMPLYVLGLMGVTRRMSHF 300 GVVFG+ AG+ +WFPKAFGF+L+ FWGK SFWFWL GFY AFMPLYVLGLMGVTRR+S F Sbjct: 437 GVVFGLMAGVVYWFPKAFGFRLDPFWGKMSFWFWLTGFYFAFMPLYVLGLMGVTRRVSQF 496 Query: 301 DDPSLQIWFVVAAIGAGLIALGIGSFIIQIAVSIRDRKKLADVTGDPWNGRTLEWSTSSP 360 +DPSLQIWFV+AA GA LIALGI S +IQ+ VS R++L D TGDPW+GRTLEWST+SP Sbjct: 497 EDPSLQIWFVIAAFGAFLIALGILSMLIQLVVSFVRREELRDTTGDPWDGRTLEWSTASP 556 Query: 361 PPAYNFAFTPVVHDNDAWADMKKNKYQRPLGDFVEIHMPKNTGAGFIIAALSAVLGFTLI 420 PP YNFAFTP+VHD D+W DMKK + RPL F IHMPKNTG G I+ A+S V F ++ Sbjct: 557 PPDYNFAFTPLVHDQDSWWDMKKRGHSRPLVGFKPIHMPKNTGTGVILGAISVVFAFAMV 616 Query: 421 WHMWLPAVATFVVLVAATIIHTFNYNRDYYIPADEVVRVEAERTRLLNSHV 471 W+MW + +FV + A I HTFNY+RD++IPA+ V E +RT L V Sbjct: 617 WYMWWLVILSFVAMAAIAIGHTFNYDRDFHIPANVVADTEGKRTEALAPEV 667 >BMEI1900 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 Bme Brucella melitensis Length = 659 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/471 (69%), Positives = 386/471 (81%), Gaps = 1/471 (0%) Query: 1 VDYYIWALQVAGVGTLLSGINLVVTIVKMRAPGMNMMKMPVFTWTSLCTNVLIVAAFPVL 60 +DYY+WAL ++G+GTLLS +NL+ TI+KMRAPGM MM++PVFTWT+LC+NVLIVAAFP+L Sbjct: 187 MDYYLWALNISGMGTLLSAVNLITTIIKMRAPGMGMMQLPVFTWTALCSNVLIVAAFPIL 246 Query: 61 TAVLAMLSLDRVFGTNFFTNDMGGNAMMYVNLIWIWGHPEVYILVLPAFGIFSEIVSTFS 120 T L++L+LDR +FFTND GGN MMYVNLIWIWGHPEVYILVLP FGI+SEI++TFS Sbjct: 247 TVTLSLLTLDRYLDFHFFTNDAGGNPMMYVNLIWIWGHPEVYILVLPCFGIYSEIIATFS 306 Query: 121 GKRLFGYTSMVYATVVITILSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNW 180 GKRLFGYTSMVYATV IT+LS+LVW HHFFTMG GASVNSFFG+ TMIISIPTGAK+FNW Sbjct: 307 GKRLFGYTSMVYATVAITVLSFLVWAHHFFTMGGGASVNSFFGVATMIISIPTGAKVFNW 366 Query: 181 LFTMYRGRIRFEVPMLWTIGFMVTFVIGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIG 240 LFTMY+GR+R E P++WTIGFM TFVIGGMTGVLLAVPPADFVLHNS+FLIAHFHNVII Sbjct: 367 LFTMYKGRVRMETPVMWTIGFMCTFVIGGMTGVLLAVPPADFVLHNSVFLIAHFHNVIIS 426 Query: 241 GVVFGMFAGINFWFPKAFGFKLNEFWGKCSFWFWLVGFYLAFMPLYVLGLMGVTRRMSHF 300 GV+FG FAG+ +W+PKAFGFKLNE GK +FW WLVGF LAFMPLYVLGLMG+TRR++H Sbjct: 427 GVLFGCFAGVVYWWPKAFGFKLNERLGKNAFWCWLVGFMLAFMPLYVLGLMGMTRRLNHT 486 Query: 301 DDPSLQIWFVVAAIGAGLIALGIGSFIIQIAVSIRDRKKLADVTGDPW-NGRTLEWSTSS 359 ++P+ I+ ++AAIG +I GI I+QI VSIRDR KL D GD W +GRTLEWS SS Sbjct: 487 ENPAWHIYLIIAAIGVAVILCGIVCQILQIMVSIRDRDKLRDTNGDTWGSGRTLEWSISS 546 Query: 360 PPPAYNFAFTPVVHDNDAWADMKKNKYQRPLGDFVEIHMPKNTGAGFIIAALSAVLGFTL 419 PPP YNFA TP V D+DAW DMK+N Y R F IHMPKNT GF++ LS GF + Sbjct: 547 PPPFYNFAETPTVRDHDAWWDMKQNGYVRRTEKFARIHMPKNTATGFLVGILSIPFGFAM 606 Query: 420 IWHMWLPAVATFVVLVAATIIHTFNYNRDYYIPADEVVRVEAERTRLLNSH 470 IWH+W A+A+ + + I H+FN +RDYY+ ADEV RVE RTR L + Sbjct: 607 IWHIWWLAIASALAMFVVAIAHSFNNDRDYYVSADEVQRVEDARTRQLTAQ 657