BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0108.p (178 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr6853 [TK] COG4567 Response regulator consisting of a CheY-lik... 237 1e-62 CC1767 Non COG 231 7e-61 PA4493 [TK] COG4567 Response regulator consisting of a CheY-like... 149 3e-36 SMc02584 [TK] COG4567 Response regulator consisting of a CheY-li... 140 2e-33 AGc82 [TK] COG4567 Response regulator consisting of a CheY-like ... 139 4e-33 >mlr6853 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Mlo Mesorhizobium loti Length = 182 Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 119/178 (66%), Positives = 135/178 (75%) Query: 1 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGG 60 M DR L I+EDDA FA+TL RSFE+R Y V++ +E+ L+ P YAVVDLKLG Sbjct: 5 MRPDRSLFIVEDDATFAKTLKRSFEKRDYDVVVCHGREDLLGALETAVPAYAVVDLKLGA 64 Query: 61 NASGLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 120 SGL CV++L A D M IVVLTGFASI TAVEAIKLGAC YLAKP+NTDDIEAAFG Sbjct: 65 RGSGLECVKLLSARDTSMRIVVLTGFASIATAVEAIKLGACHYLAKPANTDDIEAAFGRA 124 Query: 121 AGVSEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178 G V L +R TSIK LEWERIHE LV+T FNISETARRLG+HRRTLARKLEK+ V+ Sbjct: 125 EGDVSVSLSSRPTSIKNLEWERIHETLVETGFNISETARRLGLHRRTLARKLEKRVVR 182 >CC1767 Non COG Length = 177 Score = 231 bits (588), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 121/177 (68%), Positives = 135/177 (76%), Gaps = 1/177 (0%) Query: 1 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGG 60 M + L++IEDD FA TL RSFERRGY V + E+A + L+ P YAVVDLKL G Sbjct: 1 MAEPKRLILIEDDEKFAATLKRSFERRGYEVAHVSGLEQALETLRTFTPRYAVVDLKLAG 60 Query: 61 NASGLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 120 SGLACV+ L D DMLIVVLTGFASI TAVEAIKLGAC YLAKPSNTDDIEAAF Sbjct: 61 E-SGLACVRALAERDPDMLIVVLTGFASIATAVEAIKLGACHYLAKPSNTDDIEAAFLKR 119 Query: 121 AGVSEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRV 177 G + + RATSIK LEWERIH+ LV+TDFNISETARRLGMHRRTLARKLEK+R+ Sbjct: 120 EGDIDAAIGGRATSIKNLEWERIHQTLVETDFNISETARRLGMHRRTLARKLEKRRM 176 >PA4493 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Pae Pseudomonas aeruginosa Length = 186 Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 83/172 (48%), Positives = 107/172 (62%), Gaps = 1/172 (0%) Query: 7 LLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGGNASGLA 66 LL+++DD F R L R+ RRG V A S EE QQ P YAV+DLK+ G+ SGL Sbjct: 15 LLLVDDDPTFTRVLARAMSRRGLRVSTAGSAEEGLALAQQDTPDYAVLDLKMEGD-SGLV 73 Query: 67 CVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHVAGVSEV 126 + L DM +V+LTG++SI TAVEAIK GAC YL KP++ DD+ AA + Sbjct: 74 LLPKLLELHADMRVVILTGYSSIATAVEAIKRGACNYLCKPADADDVLAALLSEHADLDT 133 Query: 127 ELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178 +P S+ L+WE I VL + + NIS TAR LGMHRRTL RKL+K+ V+ Sbjct: 134 LVPENPMSVDRLQWEHIQRVLAEHEGNISATARALGMHRRTLQRKLQKRPVR 185 >SMc02584 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Sme Sinorhizobium meliloti Length = 194 Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 78/175 (44%), Positives = 104/175 (59%), Gaps = 2/175 (1%) Query: 4 DRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGGNAS 63 D+ LLI++DD AF R L R+ E RG+ V +A S E + P +AV+DL+L + S Sbjct: 22 DKSLLIVDDDTAFLRRLARAMEARGFAVEIAESVAEGIAKAKTRPPKHAVIDLRLS-DGS 80 Query: 64 GLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHVAGV 123 GL ++ + +D ++VLTG+ +I TAV A+KLGA YLAKP++ DDI AA G Sbjct: 81 GLDVIEAIRGRRDDTRMIVLTGYGNIATAVNAVKLGALDYLAKPADADDILAALIQRPG- 139 Query: 124 SEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178 VE P S + WE I V + N+SETARRL MHRRTL R L K+ K Sbjct: 140 ERVEPPENPMSADRVRWEHIQRVYEMCERNVSETARRLNMHRRTLQRILAKRAPK 194 >AGc82 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 195 Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 77/175 (44%), Positives = 103/175 (58%), Gaps = 2/175 (1%) Query: 4 DRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGGNAS 63 DR LLI++DD F R L R+ E RG+ V A + E + P YAVVDL+L + + Sbjct: 23 DRSLLIVDDDGPFLRRLARAMETRGFAVDTAETVSEGIARSKAAPPKYAVVDLRLA-DGN 81 Query: 64 GLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHVAGV 123 GL ++ + + +D IVVLTG+ +I TAV A+KLGA YLAKP++ DD+ A G Sbjct: 82 GLEVIEAIRQNRDDTQIVVLTGYGNIATAVTAVKLGALDYLAKPADADDVFNALTQRKG- 140 Query: 124 SEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178 + E+P S + WE I V + N+SETARRL MHRRTL R L K+ K Sbjct: 141 EKTEVPENPMSADRVRWEHIQRVYEMCERNVSETARRLNMHRRTLQRILAKRAPK 195