BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0083.p         (277 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VCA0906 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vib...   117   3e-26
VC1349_1 Non COG                                                       63   8e-10

>VCA0906 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibrio
           cholerae
          Length = 578

 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 110/201 (54%), Gaps = 15/201 (7%)

Query: 33  RFTALALAAEFRQGVDDLAQLARSYVVSGEPRLLEQHQAVLDIRDGQRARPQQYGRVYWD 92
           R+ +   A E RQ  DDL +L R+YVV+G+ +  + +  +LDIR+G++ RP+ Y  +YWD
Sbjct: 42  RYQSYQAADELRQSSDDLTRLGRTYVVTGDEKYEKMYMDILDIRNGKKPRPESYHTIYWD 101

Query: 93  LVGADGQPPRPDSTVAVSLRKLMEQAGYSPAELARLDEAWLMSDALASTERRAMQEMQG- 151
           LV   GQ P+PD    ++L+++M+  G+S  E A L EA   SDAL + E +AM  ++G 
Sbjct: 102 LVLQYGQKPKPDGQ-TIALQQMMKDLGFSDREFALLKEAQNNSDALVNMEVKAMNAVKGL 160

Query: 152 --DAGAR---------GPAQQMLHGDGYQLHRTSILQAFDDMVGLLEQRTAREV--ALAQ 198
             DA              A Q+LH + Y   +  I+   D     LE RTA++   A  Q
Sbjct: 161 FPDASGNYTVKGEPDVNMAVQLLHSEEYHREKAKIMAPIDRFFQELETRTAQQFNQAAEQ 220

Query: 199 LLAQRLAWLSTLLAVAVVVIL 219
           + +  L    +L+ VA++ I+
Sbjct: 221 VKSTVLIGNISLVVVAIIAII 241


>VC1349_1 Non COG
          Length = 470

 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 85/208 (40%), Gaps = 14/208 (6%)

Query: 1   LVALVAVLVVMWGTATVYAERARQALAQAQETRFTALALAAEFRQGVDDLAQLARSYVVS 60
           L  L+A+L V     T      R    Q  E  F    L+ E +Q  D L + AR+Y  +
Sbjct: 11  LFCLMAILAVAMFKVTRQVADLRLESHQYSEQLFHFYRLSQELKQSSDHLTKFARAYAST 70

Query: 61  GEPRLLEQHQAVLDIRDGQRARPQQYGRVYWDLVG-ADGQPPRPDSTVAV-SLRKLMEQA 118
           G  R L     VL++R+G+   P      +WD+V   D     P++     +L + + Q+
Sbjct: 71  GNERWLRMFNQVLNVRNGKLPAPSNNDYEFWDVVVLNDSSELTPNANQRYPTLIERIRQS 130

Query: 119 GYSPAELARLDEAWLMSDALASTERRAM-------QEMQGDAGARGP-----AQQMLHGD 166
           G    E   L  A  +SD L + ER A        +E  G+    G      A+ +L+ +
Sbjct: 131 GIGSVEFLELQNALALSDQLVALEREAFMAVKGWKREFAGEYRYTGEPDLNFARSLLYSE 190

Query: 167 GYQLHRTSILQAFDDMVGLLEQRTAREV 194
            Y L +  I+ A       +  R   EV
Sbjct: 191 KYFLEKAKIMAAIGSAHSNIVDRIESEV 218