BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0068.p (246 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEI0664 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-typ... 229 5e-60 mll1003 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 222 5e-58 mlr2441 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 189 4e-48 Cgl0031 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 138 9e-33 mlr7626 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 129 8e-30 >BMEI0664 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Bme Brucella melitensis Length = 387 Score = 229 bits (583), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 116/186 (62%), Positives = 139/186 (74%) Query: 58 FFSGNVGAGLFSWLARHGWIATVADGTPLVTGIPKVILWWAVVALAASFVLARTRLGNWI 117 FSG+ GLF+WLA IA +G P V G+P +LW+ V+AL A+++L RTR GNWI Sbjct: 199 LFSGDAFPGLFAWLAEKDLIAKFPNGEPAVKGVPVEVLWFVVIALVATYILVRTRFGNWI 258 Query: 118 FAVGGDAVAAKNMGVPVRKVKIGLFVFTAFCACLFAVLQVGDFGSAAADRGLQKEFEAII 177 FA GGDA+AA+N GVPVR+VK LF+ TA A L A+L V D GS A RG QKEFEAII Sbjct: 259 FAAGGDALAARNSGVPVRRVKTTLFMCTAMEAALVAILTVLDAGSTDARRGFQKEFEAII 318 Query: 178 AAVIGGALLTGGYGSVIGACFGALIFGVVQIGITYTNLSSDWFRVFLGVMLLVAVLFNNF 237 AAVIGG LLTGGYGS IGA FGA+IFG+V IG+TYT + DW+ VFLG MLL+AVLFNNF Sbjct: 319 AAVIGGCLLTGGYGSAIGAFFGAIIFGMVLIGLTYTQIDQDWYLVFLGGMLLIAVLFNNF 378 Query: 238 VRRRIT 243 +R+ T Sbjct: 379 IRKHAT 384 >mll1003 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Mlo Mesorhizobium loti Length = 373 Score = 222 bits (566), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 114/187 (60%), Positives = 136/187 (72%) Query: 57 KFFSGNVGAGLFSWLARHGWIATVADGTPLVTGIPKVILWWAVVALAASFVLARTRLGNW 116 FFSG+ + LFSWLA G I G P V GIP ILW+ +AL A++VL RTR GNW Sbjct: 184 PFFSGDAFSSLFSWLAEKGIIEAFPSGAPKVPGIPVEILWFIAIALLATWVLLRTRFGNW 243 Query: 117 IFAVGGDAVAAKNMGVPVRKVKIGLFVFTAFCACLFAVLQVGDFGSAAADRGLQKEFEAI 176 IFA GGD AA+ VPV +VK LFV TA CA L A+L V D GS A RG QKEFEAI Sbjct: 244 IFAAGGDPRAARKSAVPVARVKTTLFVITALCATLVAILTVLDAGSTDARRGFQKEFEAI 303 Query: 177 IAAVIGGALLTGGYGSVIGACFGALIFGVVQIGITYTNLSSDWFRVFLGVMLLVAVLFNN 236 IAAVIGG LLTGGYGS IGA FG+++FG+V IG+TYT++ DW+ VFLG MLL+AV+FNN Sbjct: 304 IAAVIGGCLLTGGYGSAIGAFFGSIVFGMVLIGLTYTSIDQDWYLVFLGGMLLIAVIFNN 363 Query: 237 FVRRRIT 243 +R+R+T Sbjct: 364 VIRKRVT 370 >mlr2441 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Mlo Mesorhizobium loti Length = 365 Score = 189 bits (480), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 113/190 (59%), Positives = 140/190 (73%) Query: 57 KFFSGNVGAGLFSWLARHGWIATVADGTPLVTGIPKVILWWAVVALAASFVLARTRLGNW 116 FSG V GL +WLA G I ADG P ++GIP I+WW V+ LA +++L R+R GNW Sbjct: 176 SLFSGQVFTGLIAWLADLGLIGKRADGMPSISGIPVSIVWWIVLTLACTWLLTRSRFGNW 235 Query: 117 IFAVGGDAVAAKNMGVPVRKVKIGLFVFTAFCACLFAVLQVGDFGSAAADRGLQKEFEAI 176 IFA GG+A AA+N+GVPV + KI LFV TA A LFA +QV GSA RG QKEFEAI Sbjct: 236 IFAAGGEANAARNLGVPVARTKITLFVMTALAAALFAAIQVLVTGSADTLRGTQKEFEAI 295 Query: 177 IAAVIGGALLTGGYGSVIGACFGALIFGVVQIGITYTNLSSDWFRVFLGVMLLVAVLFNN 236 IA VIGG LLTGGYGS IGA FGALIFGVVQ+GI YT + +DWF++F+G M+++AVLFN+ Sbjct: 296 IAVVIGGTLLTGGYGSAIGAMFGALIFGVVQMGIFYTGIDTDWFKLFMGAMMVIAVLFNS 355 Query: 237 FVRRRITEAK 246 +VR R ++ Sbjct: 356 YVRNRAMRSR 365 >Cgl0031 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Cgl Corynebacterium glutamicum Length = 341 Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 79/164 (48%), Positives = 100/164 (60%), Gaps = 1/164 (0%) Query: 78 ATVADGTPLV-TGIPKVILWWAVVALAASFVLARTRLGNWIFAVGGDAVAAKNMGVPVRK 136 A A P+ I + WW + + +FVL +TR+GNWIFAVGGD AA+ +GVPVR Sbjct: 172 AVFASSIPIFGVNIRITVFWWLLFVIVGTFVLFKTRIGNWIFAVGGDEEAARAVGVPVRG 231 Query: 137 VKIGLFVFTAFCACLFAVLQVGDFGSAAADRGLQKEFEAIIAAVIGGALLTGGYGSVIGA 196 VKIGLF+F F A + + F S A +G+ EF IIAAVIGG +TGG G+V+G Sbjct: 232 VKIGLFMFVGFAAWFVGMHNLFLFDSIQAGQGVGNEFLYIIAAVIGGISMTGGRGTVVGT 291 Query: 197 CFGALIFGVVQIGITYTNLSSDWFRVFLGVMLLVAVLFNNFVRR 240 GALIFG+ GI Y + DWF FLG LL+AVL N+ R Sbjct: 292 MIGALIFGMTNQGIVYAGWNPDWFMFFLGGTLLLAVLLNHRFER 335 >mlr7626 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Mlo Mesorhizobium loti Length = 380 Score = 129 bits (323), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 67/146 (45%), Positives = 87/146 (59%) Query: 94 ILWWAVVALAASFVLARTRLGNWIFAVGGDAVAAKNMGVPVRKVKIGLFVFTAFCACLFA 153 + WW L F+L +R GNWI A+GGDAV+A+N G+P +V I LF+ + CA Sbjct: 220 LFWWIAAILIVGFILNFSRFGNWILAMGGDAVSARNAGIPTDRVTIALFMSSGLCASFVG 279 Query: 154 VLQVGDFGSAAADRGLQKEFEAIIAAVIGGALLTGGYGSVIGACFGALIFGVVQIGITYT 213 + Q + SA G F +IIA VIGG LLTGGYGSV+G G L F +V GI YT Sbjct: 280 MSQAILYNSAQVAAGQSFIFNSIIAVVIGGVLLTGGYGSVVGIVLGTLTFAIVNQGIFYT 339 Query: 214 NLSSDWFRVFLGVMLLVAVLFNNFVR 239 ++W + +GV+LL AVL NN R Sbjct: 340 GFDANWASLIIGVLLLAAVLMNNTFR 365