BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0038.p         (158 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all3141 [O] COG0464 ATPases of the AAA+ class Nos Nostoc sp. PCC...   162   3e-40
mlr6544 Non COG                                                        96   4e-20
Cj0377 [O] COG0464 ATPases of the AAA+ class Cje Campylobacter j...    85   6e-17
MK0878 [O] COG1222 ATP-dependent 26S proteasome regulatory subun...    72   4e-13
ECU10g1420 Non COG                                                     65   5e-11

>all3141 [O] COG0464 ATPases of the AAA+ class Nos Nostoc sp. PCC 7120
          Length = 448

 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/158 (48%), Positives = 111/158 (70%)

Query: 1   VFDQAQHKNWILFFDEADALFGKRTEGSSSNDRHANQEVAYLLQRIEDFPGVVILASNLK 60
           +F +A+ K+WILFFDEADALF KRT    ++D++ANQEV+YLLQR+E++ G+VIL+SN K
Sbjct: 291 LFAKAESKDWILFFDEADALFSKRTNVRDAHDKYANQEVSYLLQRVENYDGLVILSSNFK 350

Query: 61  DNIDDAFSRRFQSAIYFPLPDGLQRRRLWENLFPGRRHLAEDVDLDRLAEDNILAGGALL 120
            NIDDAF RRFQ+ I+FPLP   +R ++W+  FP +  LAE V+L  LA    L+G  ++
Sbjct: 351 SNIDDAFIRRFQAIIHFPLPSSKERLQIWQMAFPFQVELAEVVNLWELATTYELSGADIM 410

Query: 121 NVASHAAMRAEREGRKTICQDDLLRGIRKEFIKEGRAI 158
           NV  +  ++  + G   I Q+DL   I++EF K G+ +
Sbjct: 411 NVVQYCCLQTLKRGDTVIHQEDLQAAIKREFGKAGKIV 448


>mlr6544 Non COG
          Length = 782

 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 68/117 (58%)

Query: 1   VFDQAQHKNWILFFDEADALFGKRTEGSSSNDRHANQEVAYLLQRIEDFPGVVILASNLK 60
           VF +AQ     +  DEA+ L  +R+E + ++DR+AN EVAYLLQR+E   G+VIL +N++
Sbjct: 614 VFMEAQLSGAAVLVDEAEGLMARRSEINDAHDRYANIEVAYLLQRMEAHEGLVILTTNMR 673

Query: 61  DNIDDAFSRRFQSAIYFPLPDGLQRRRLWENLFPGRRHLAEDVDLDRLAEDNILAGG 117
            N+D AF RR +  I FP PD   R  +W    P   H+ +D     LA    L GG
Sbjct: 674 QNLDTAFLRRLRFVIDFPRPDATAREAIWRYCLPDGSHMLDDATFRILARKIELTGG 730


>Cj0377 [O] COG0464 ATPases of the AAA+ class Cje Campylobacter jejuni
          Length = 570

 Score = 85.1 bits (209), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 1/141 (0%)

Query: 11  ILFFDEADALFGKRTEGSSSNDRHANQEVAYLLQRIEDFPGVVILASNLKDNIDDAFSRR 70
           IL  +EAD     R +GSS +D+  NQ     L++IE F GV+I  +N  +++D AFSRR
Sbjct: 419 ILLLNEADQFLSTRVDGSSGSDKMHNQMQNIFLEQIERFSGVIIATTNFLESLDSAFSRR 478

Query: 71  FQSAIYFPLPDGLQRRRLWENLFPGRRHLAEDVDLDRLAEDNILAGGALLNVASHAAMRA 130
           F   I F  PD   R ++WE   P +    +D D++ L+    L+G  +L V  + A++ 
Sbjct: 479 FDYKIEFKKPDFKDRLKIWEKFLPKKALFEKDFDINILSNYE-LSGAQILMVVKNTALKV 537

Query: 131 EREGRKTICQDDLLRGIRKEF 151
                      D +  I+KE 
Sbjct: 538 AVSKDGVFKIQDFIESIQKEL 558


>MK0878 [O] COG1222 ATP-dependent 26S proteasome regulatory subunit Mka
           Methanopyrus kandleri AV19
          Length = 436

 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 9/155 (5%)

Query: 1   VFDQAQHK-NWILFFDEADALFGKRTEGSSSNDRHANQEVAYLLQRIEDFPGV----VIL 55
           +F+ A+ K   I+F DE DA+  +R   ++S DR   + +  LL  ++ F  +    VI 
Sbjct: 264 LFELAREKAPSIIFIDEIDAIGARRMRDATSGDREVQRTLTQLLAEMDGFDPLDDIKVIA 323

Query: 56  ASNLKDNIDDAFSR--RFQSAIYFPLPDGLQRRRLWENLFPGRRHLAEDVDLDRLAEDNI 113
           A+N KD +D A  R  RF   I  PLPD   R  ++  +     +LAEDVDL +LA+   
Sbjct: 324 ATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIF-KIHTRDMNLAEDVDLQKLAKITE 382

Query: 114 LAGGA-LLNVASHAAMRAEREGRKTICQDDLLRGI 147
            A GA +  + + A M A RE R  +  DD L+ +
Sbjct: 383 GASGADIKAICTEAGMMAIREDRDIVTMDDFLKAV 417


>ECU10g1420 Non COG
          Length = 401

 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 8/151 (5%)

Query: 6   QHKNWILFFDEADALFGKRTEGSSSNDRHANQEVAYLLQRIEDFPGV----VILASNLKD 61
           + K  I+F DE DA+  KR++   + DR   + +  LL +++ F       +I A+N  D
Sbjct: 239 ERKPTIIFIDEIDAIGAKRSDSDQTGDREVQRTMLELLNQLDGFSSSEEVKIIAATNRVD 298

Query: 62  NIDDAFSR--RFQSAIYFPLPDGLQRRRLWENLFPGRRHLAEDVDLDRLAEDNILAGGAL 119
            +D A  R  R    I FPLP+ L R+R+ + +   +  + +DV+ D LA       GA 
Sbjct: 299 ILDPALLRSGRLDRKIEFPLPNTLGRKRILQ-IHARKMSVRDDVNFDELARSTEGFNGAQ 357

Query: 120 LN-VASHAAMRAEREGRKTICQDDLLRGIRK 149
              V   A M A R+ +  I Q+D + GI++
Sbjct: 358 CKAVCVEAGMAALRKEKTEISQNDFMDGIQE 388