BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0069.p         (156 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1373 [O] COG1495 Disulfide bond formation protein DsbB Rso Ra...   133   2e-31
PA5256 [O] COG1495 Disulfide bond formation protein DsbB Pae Pse...    67   2e-11

>RSc1373 [O] COG1495 Disulfide bond formation protein DsbB Rso Ralstonia
           solanacearum
          Length = 159

 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 101/156 (64%), Gaps = 7/156 (4%)

Query: 3   SSKPVFLLVALVCIALLGFAMYLQIVEEMQPCPLCVIQRYMFVLVAAFAXVRDPALHVR- 61
           +S+  FLL+A++   L+G+A+YLQ VE +QPCPLCV+QR+ FV +  F+ +   +   R 
Sbjct: 4   NSRAFFLLIAVIAFGLVGYALYLQHVEGLQPCPLCVLQRFAFVGIGVFSLLAALSSATRL 63

Query: 62  ------AGSGLGGAGTAIWHLYVKAHPGVSCTTDPLETALNQLPTAKLWPQMFTADGFCS 115
                   SGLGG   A +H+ +  +P  SC  DP+E  +N LPTAK  PQ+F +DG C+
Sbjct: 64  LWHGLGMLSGLGGIFVAGYHVSLLLNPKASCGIDPIENWVNALPTAKWLPQVFESDGLCT 123

Query: 116 APWPPVFGLQIPTWSLIWFAVLALVLIVQMLRRAPR 151
           AP PPV G+ IP WSLIW  +LAL L+V M+RR  R
Sbjct: 124 APLPPVLGVSIPLWSLIWMVILALTLVVAMIRRERR 159


>PA5256 [O] COG1495 Disulfide bond formation protein DsbB Pae Pseudomonas
           aeruginosa
          Length = 163

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 12/161 (7%)

Query: 1   MKSSKPVFLLVALVCIALLGFAMYLQIVEEMQPCPLCVIQRYMFVLVAAF---AXVRDPA 57
           + S + +FLL  L C+A++G A+YL+ V  ++ CPLCV+QR  F+L+        ++ P 
Sbjct: 3   LASPRQLFLLAFLACVAIMGGALYLEHVVGLEACPLCVVQRIFFILIGLTCLAGAIQGPG 62

Query: 58  LHVRAGS-------GLGGAGTAIWHLYVKAHP--GVSCTTDPLETALNQLPTAKLWPQMF 108
           L  R           LGG  TA   ++++  P   +      L+  +  LP  ++   + 
Sbjct: 63  LRGRRIYSVLVFLLALGGGATAARQVWLQTVPLDQLPACLPSLDYMMQALPFQEVIRLVL 122

Query: 109 TADGFCSAPWPPVFGLQIPTWSLIWFAVLALVLIVQMLRRA 149
                C+     +F L IP WSL+ F       IVQ LRRA
Sbjct: 123 HGTADCAQVSWTLFTLSIPEWSLLAFVAYLGFSIVQFLRRA 163