BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0068.p (277 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2903 [J] COG2890 Methylase of polypeptide chain release facto... 254 1e-67 NMA0369 [J] COG2890 Methylase of polypeptide chain release facto... 245 7e-65 NMB2065 [J] COG2890 Methylase of polypeptide chain release facto... 243 3e-64 XF1512 [J] COG2890 Methylase of polypeptide chain release factor... 226 4e-59 VC2178 [J] COG2890 Methylase of polypeptide chain release factor... 221 2e-57 >RSc2903 [J] COG2890 Methylase of polypeptide chain release factors Rso Ralstonia solanacearum Length = 306 Score = 254 bits (650), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 148/267 (55%), Positives = 174/267 (65%), Gaps = 6/267 (2%) Query: 15 VLKTAPLDPLENRILLCHALRLTRVQLITQSERQLSAAEAETLAALLARRLRGEPIAYIV 74 VL A L LE R+L+ H L+RVQLITQ + LA L RRL GEP+AY++ Sbjct: 32 VLTGAGLPALEARMLVSHVTGLSRVQLITQDTCGIDDGTRTRLAELATRRLAGEPMAYLL 91 Query: 75 GQREFYGLDLRVSPDVLIPRPDTELLVELALERLPQ--GGSALDMGTGSGAIAVAIAHTR 132 G+REF+G +V+P VLIPRPDTELLVE AL+R+ + LD+GTGSG IAV IA R Sbjct: 92 GEREFFGRMFQVTPAVLIPRPDTELLVEQALDRIDDRDAPAVLDLGTGSGIIAVTIALAR 151 Query: 133 PDAQVTALDASPAALAIARENAST-HQVRVRLLESDWYGAL---DADQAFDLIVSNPPYI 188 DA+V A D S ALA+A NA + DWY AL DA FDLIVSNPPYI Sbjct: 152 RDARVWATDTSADALAVAVRNAQALGAANMHAALGDWYAALPESDAPPVFDLIVSNPPYI 211 Query: 189 VAGDIHLSQGDLRFEPVDALTDHADGLSDLRTIIEGAPAHLKAGGWLLMEHGYDQAAAVR 248 + D HL QGDLRFEP ALTDH DGL LRTI+ GAPA L A GWLL+EHGYDQ AVR Sbjct: 212 ASTDAHLGQGDLRFEPAGALTDHGDGLRHLRTIVAGAPARLAADGWLLLEHGYDQGPAVR 271 Query: 249 ALLTGGGWREVQSWRDLAGIERVSGAR 275 ALL G+ +V + +DL G +R SG R Sbjct: 272 ALLADAGFADVFTAQDLTGHDRCSGGR 298 >NMA0369 [J] COG2890 Methylase of polypeptide chain release factors NmA Neisseria meningitidis Z2491 Length = 273 Score = 245 bits (626), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 133/263 (50%), Positives = 171/263 (65%), Gaps = 1/263 (0%) Query: 11 TLATVLKTAPLDPLENRILLCHALRLTRVQLITQSERQLSAAEAETLAALLARRLRGEPI 70 T L + L E R+LL + TRVQL+T+ ++ + L RRL GEP+ Sbjct: 2 TFDKWLGLSKLPKNEARMLLQYVSEYTRVQLLTRGGEEMPDEVRQRADRLAQRRLNGEPV 61 Query: 71 AYIVGQREFYGLDLRVSPDVLIPRPDTELLVELALERLPQGGSALDMGTGSGAIAVAIAH 130 AYI+G REFYG V+P VLIPRP+TE LVE L RLP+ G D+GTGSGA+AV +A Sbjct: 62 AYILGAREFYGRRFTVNPSVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVAL 121 Query: 131 TRPDAQVTALDASPAALAIARENASTHQVRVRLLESDWYGA-LDADQAFDLIVSNPPYIV 189 RPDA V A D SP AL AR+NA+ RV W+ + ++ +D+IVSNPPYI Sbjct: 122 ERPDAFVRASDISPPALETARKNAADLGARVEFAYGSWFDTDMPSEGKWDIIVSNPPYIE 181 Query: 190 AGDIHLSQGDLRFEPVDALTDHADGLSDLRTIIEGAPAHLKAGGWLLMEHGYDQAAAVRA 249 GD HLSQGDLRFEP ALTD +DGLS +RT+ +GAP L GG+LL+EHG+DQ AAVR Sbjct: 182 NGDKHLSQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRG 241 Query: 250 LLTGGGWREVQSWRDLAGIERVS 272 +L G+ V++ DLAG++RV+ Sbjct: 242 VLAENGFSGVETLPDLAGLDRVT 264 >NMB2065 [J] COG2890 Methylase of polypeptide chain release factors Nme Neisseria meningitidis MC58 Length = 423 Score = 243 bits (621), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 132/263 (50%), Positives = 170/263 (64%), Gaps = 1/263 (0%) Query: 11 TLATVLKTAPLDPLENRILLCHALRLTRVQLITQSERQLSAAEAETLAALLARRLRGEPI 70 T L + L E R+LL + TRVQL+T+ ++ + L RRL GEP+ Sbjct: 152 TFDKWLGLSKLPKNEARMLLQYVSEYTRVQLLTRGGEEMPDEVRQRADRLAQRRLNGEPV 211 Query: 71 AYIVGQREFYGLDLRVSPDVLIPRPDTELLVELALERLPQGGSALDMGTGSGAIAVAIAH 130 AYI+G REFYG V+P VLIPRP+TE LVE L RLP+ G D+GTGSGA+AV +A Sbjct: 212 AYILGVREFYGRRFTVNPSVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVAL 271 Query: 131 TRPDAQVTALDASPAALAIARENASTHQVRVRLLESDWYGA-LDADQAFDLIVSNPPYIV 189 RPDA V A D SP AL AR+NA+ RV W+ + ++ +D+IVSNPPYI Sbjct: 272 ERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 Query: 190 AGDIHLSQGDLRFEPVDALTDHADGLSDLRTIIEGAPAHLKAGGWLLMEHGYDQAAAVRA 249 GD HL QGDLRFEP ALTD +DGLS +RT+ +GAP L GG+LL+EHG+DQ AAVR Sbjct: 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRG 391 Query: 250 LLTGGGWREVQSWRDLAGIERVS 272 +L G+ V++ DLAG++RV+ Sbjct: 392 VLAENGFSGVETLPDLAGLDRVT 414 >XF1512 [J] COG2890 Methylase of polypeptide chain release factors Xfa Xylella fastidiosa 9a5c Length = 275 Score = 226 bits (576), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 133/261 (50%), Positives = 166/261 (63%), Gaps = 4/261 (1%) Query: 18 TAPLDPLENRILLCHALRLTRVQLITQSERQLSAAEAETLAALLARRLRGEPIAYIVGQR 77 T ++ ++ LL HAL R L T + L+AA E+ AL+ +R RG P+AY++G+R Sbjct: 12 TERIERVDAEALLLHALDCDRAWLFTHGDIPLAAAATESFQALVEQRARGIPVAYLIGRR 71 Query: 78 EFYGLDLRVSPDVLIPRPDTELLVELALERLPQGGS--ALDMGTGSGAIAVAIAHTRPDA 135 F+ LD+ VS LIPR +TE LVE AL+RL D+GTGSGAIA+AIA RP A Sbjct: 72 GFWTLDVMVSSATLIPRAETETLVEQALQRLDHASERRVADLGTGSGAIALAIACERPQA 131 Query: 136 QVTALDASPAALAIARENASTHQVR-VRLLESDWYGALDADQAFDLIVSNPPYIVAGDIH 194 QV A D S AAL IA NAS H + V E DWY AL ++ FDLIVSNPPYI D H Sbjct: 132 QVLATDNSAAALDIAARNASAHGLNHVVFREGDWYEALLGER-FDLIVSNPPYIAVTDPH 190 Query: 195 LSQGDLRFEPVDALTDHADGLSDLRTIIEGAPAHLKAGGWLLMEHGYDQAAAVRALLTGG 254 L+QGDLRFEP AL DGL LR + GAPA+L+ GGWL+MEHG+DQ AA+R LL Sbjct: 191 LTQGDLRFEPPSALISGGDGLDALRILTAGAPAYLRPGGWLVMEHGWDQGAAMRTLLHTA 250 Query: 255 GWREVQSWRDLAGIERVSGAR 275 G V + +DL +RV+ R Sbjct: 251 GLVAVATVQDLEARDRVTVGR 271 >VC2178 [J] COG2890 Methylase of polypeptide chain release factors Vch Vibrio cholerae Length = 286 Score = 221 bits (562), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 122/251 (48%), Positives = 158/251 (62%), Gaps = 2/251 (0%) Query: 24 LENRILLCHALRLTRVQLITQSERQLSAAEAETLAALLARRLRGEPIAYIVGQREFYGLD 83 L+ +LLCH L R L+T ++ L +L LLARR GEP+AYI+G+REF+ L Sbjct: 26 LDAAVLLCHVLAKPRSYLLTWPDKILEKPTLASLELLLARRRAGEPMAYILGEREFWSLP 85 Query: 84 LRVSPDVLIPRPDTELLVELALERLPQ-GGSALDMGTGSGAIAVAIAHTRPDAQVTALDA 142 L+VSP LIPRPDTE LVELAL++ G LD+GTG+GAIA+A+A P QVT +D Sbjct: 86 LKVSPSTLIPRPDTERLVELALDKAALIDGELLDLGTGTGAIALALASELPTRQVTGIDL 145 Query: 143 SPAALAIARENASTHQV-RVRLLESDWYGALDADQAFDLIVSNPPYIVAGDIHLSQGDLR 201 P A +ARENA+ + + + W+ L F LIVSNPPYI D HLS GD+R Sbjct: 146 RPEAAELARENATRLAIHNAQFFQGSWFSPLADGTKFALIVSNPPYIEENDPHLSLGDVR 205 Query: 202 FEPVDALTDHADGLSDLRTIIEGAPAHLKAGGWLLMEHGYDQAAAVRALLTGGGWREVQS 261 FEP AL +GL+D+R I AP L GGWLL EHGYDQ AVR +L G++ + + Sbjct: 206 FEPKSALVAAENGLADIRHISTHAPHFLLDGGWLLFEHGYDQGVAVRTILRDLGYQNIIT 265 Query: 262 WRDLAGIERVS 272 +D AG +RV+ Sbjct: 266 EQDYAGHDRVT 276