BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0056.p         (110 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll0364 [H] COG0212 5-formyltetrahydrofolate cyclo-ligase Mlo Me...    94   7e-20
RSc0089 [H] COG0212 5-formyltetrahydrofolate cyclo-ligase Rso Ra...    90   1e-18
SMc03974 [H] COG0212 5-formyltetrahydrofolate cyclo-ligase Sme S...    82   4e-16
CC3245 [H] COG0212 5-formyltetrahydrofolate cyclo-ligase Ccr Cau...    76   2e-14
mll3954 [H] COG0212 5-formyltetrahydrofolate cyclo-ligase Mlo Me...    67   1e-11

>mll0364 [H] COG0212 5-formyltetrahydrofolate cyclo-ligase Mlo Mesorhizobium
           loti
          Length = 197

 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 69/108 (63%), Gaps = 3/108 (2%)

Query: 4   CLPVVVEKDAPLLFRAWQPGDALQKDALGTLAPLPSAPEIRPQALLIPCVGFNAAGFRLG 63
            LP+VVEK  PL+FRA++PGD L+K       P    P + P  ++ P VG + A +RLG
Sbjct: 91  ALPIVVEKGHPLIFRAYKPGDRLEKGVWNIPIPAEGDP-VLPDIVIAPIVGIDPANYRLG 149

Query: 64  YGGGFYDRTLAGLP-RPRAVGVCYRFG-LAAFEAQAHDVPMEAILTDA 109
           YGGGF+DRTLA +P +P  +GV Y    +A    Q HD+PM+ I+T+A
Sbjct: 150 YGGGFFDRTLAAMPFKPLVIGVGYELQRIATICPQPHDIPMDRIVTEA 197


>RSc0089 [H] COG0212 5-formyltetrahydrofolate cyclo-ligase Rso Ralstonia
           solanacearum
          Length = 201

 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 68/110 (61%), Gaps = 8/110 (7%)

Query: 5   LPVVVEKDAPLLFRAWQPGDALQKDALGTLAPLPSAPEIR-PQALLIPCVGFNAAGFRLG 63
           LPVV +K +PL FR W P   +   A G   P+P A E   P ALL+PCVGF+A  +R+G
Sbjct: 90  LPVVTDKFSPLQFRRWTPDCEMAPGAYGI--PIPRAGEAETPDALLVPCVGFDAHRYRIG 147

Query: 64  YGGGFYDRTLAGL----PRPRAVGVCYRFG-LAAFEAQAHDVPMEAILTD 108
           YGGGFYDRTLA L     RPR +G+ +    L +   Q HD+ ++ I+T+
Sbjct: 148 YGGGFYDRTLAALHAAGHRPRTIGIAFEANRLESIAPQPHDIALDCIVTE 197


>SMc03974 [H] COG0212 5-formyltetrahydrofolate cyclo-ligase Sme Sinorhizobium
           meliloti
          Length = 193

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 6/112 (5%)

Query: 3   LCLPVVVEKDAPLLFRAWQPGDALQKDALGTLAPLPSAPEIRPQALLIPCVGFNAAGFRL 62
           LCLPV+++    ++FR    G A+ +   GT  P P APE+ P  +L+P   F+A G R+
Sbjct: 75  LCLPVILDS-KDIVFRELLDGIAVVETGFGTTGPGPDAPEVDPDIMLVPLSAFDAVGHRI 133

Query: 63  GYGGGFYDRTLAGLPR----PRAVGVCYRFG-LAAFEAQAHDVPMEAILTDA 109
           GYG G+YDR +  L R    PR +G+ +    +A+  A+ HDV ++A+LT++
Sbjct: 134 GYGAGYYDRAIERLRRKGHMPRLIGIAFDCQEVASVPAEPHDVALDAVLTES 185


>CC3245 [H] COG0212 5-formyltetrahydrofolate cyclo-ligase Ccr Caulobacter
           vibrioides
          Length = 214

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 62/113 (54%), Gaps = 5/113 (4%)

Query: 3   LCLPVVVEKDA-PLLFRAWQPGDALQKDALGTLAPLPSAPEIRPQALLIPCVGFNAAGFR 61
           L LP VV  D   ++FR W PG  L++D +G LAP    P I P  ++ P + F   G R
Sbjct: 93  LALPKVVNPDGGKMIFRRWTPGQPLKRDKIGLLAPGREQPMIVPDLVVTPLLAFQRDGVR 152

Query: 62  LGYGGGFYDRTLAGLPRPRAV---GVCYRFGLAA-FEAQAHDVPMEAILTDAD 110
           LG GGG+YDR LA L   R V   G+ Y    A     +AHD  ++AILT+ +
Sbjct: 153 LGQGGGYYDRALAFLRSRRPVFVLGLAYSGQQAENLPHEAHDQRLDAILTEKE 205


>mll3954 [H] COG0212 5-formyltetrahydrofolate cyclo-ligase Mlo Mesorhizobium
           loti
          Length = 195

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 6/113 (5%)

Query: 2   HLCLPVVVEKDAPLLFRAWQPGDALQKDALGTLAPLPSAPEIRPQALLIPCVGFNAAGFR 61
            LCLP +++K   ++FR    G  +     GT+ P   A  + P+ +L+P   F+A G R
Sbjct: 75  RLCLPAILDK-TTIVFRELVRGAPMVDMGFGTVGPHEEAEVLDPEVMLVPLAAFDARGHR 133

Query: 62  LGYGGGFYDRTLAGL----PRPRAVGVCYRFG-LAAFEAQAHDVPMEAILTDA 109
           +GYG G+YDR +A L      PR +G+ +    +A    + HDV +  ILT++
Sbjct: 134 IGYGAGYYDRAIAKLVDKGHTPRLIGIAFDCQEVAQVPDENHDVIIPEILTES 186