BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0034.p         (312 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0317 Non COG                                                       126   6e-29

>RSc0317 Non COG
          Length = 408

 Score =  126 bits (317), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/174 (46%), Positives = 100/174 (57%), Gaps = 6/174 (3%)

Query: 13  PARLPHRPPAT------APPGASTGSAFARVSLLVYALLIVYASWYPFSGWRDLGIKPFD 66
           P+  P  PP T      A P     S  AR  L  + LL+VYAS YPFSGW D G+ PF 
Sbjct: 4   PSAFPQLPPVTDLHALPAAPSTHRHSPLARAGLAWFVLLVVYASLYPFSGWIDTGVSPFA 63

Query: 67  YLWARLPYYWTGFDVWTNVAGYAPLGLLLVLAMHPHIRPWWAVLPATLAGVLLSACMEAG 126
           YL A LP Y T FD+ TN+ GY PLG+L+VL++HP +  W AV  A LAG+LLS  MEA 
Sbjct: 64  YLSAPLPRYNTRFDLLTNIWGYLPLGMLVVLSLHPRVTGWRAVALAMLAGLLLSGAMEAA 123

Query: 127 QTYLPTRVPSNLDLLTNAAGVTLGALLGAACSRTFLHESRFLLARQRWFPAEAS 180
           QTYLPTR+ SN+DL  N  G  LG ++    +   +        R RWF   A+
Sbjct: 124 QTYLPTRISSNVDLAANTVGALLGGIVMVPFAARLIDRGSLRRLRWRWFEPHAT 177