BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0030.p         (47 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1557 [O] COG3278 Cbb3-type cytochrome oxidase, subunit 1 Pae P...    89   3e-18
RSc1276 [O] COG3278 Cbb3-type cytochrome oxidase, subunit 1 Rso ...    85   5e-17
PA4133 [O] COG3278 Cbb3-type cytochrome oxidase, subunit 1 Pae P...    84   6e-17
NMB1725 [O] COG3278 Cbb3-type cytochrome oxidase, subunit 1 Nme ...    82   4e-16
NMA1980 [O] COG3278 Cbb3-type cytochrome oxidase, subunit 1 NmA ...    82   4e-16

>PA1557 [O] COG3278 Cbb3-type cytochrome oxidase, subunit 1 Pae
          Pseudomonas aeruginosa
          Length = 475

 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/44 (90%), Positives = 41/44 (93%)

Query: 2  GVPWLSFGRLRPLHTNAVIFAFGGCALMATSYYVVQRTCQVRLF 45
          G+PW SFGRLRPLHTNAVIFAFGGCAL ATSYY VQRTCQVRLF
Sbjct: 48 GLPWTSFGRLRPLHTNAVIFAFGGCALFATSYYAVQRTCQVRLF 91


>RSc1276 [O] COG3278 Cbb3-type cytochrome oxidase, subunit 1 Rso Ralstonia
          solanacearum
          Length = 485

 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 40/43 (93%)

Query: 2  GVPWLSFGRLRPLHTNAVIFAFGGCALMATSYYVVQRTCQVRL 44
          GVPWL++GRLRPLHTNAVIFAFGG AL ATSYYVVQRTCQ RL
Sbjct: 51 GVPWLTYGRLRPLHTNAVIFAFGGSALFATSYYVVQRTCQARL 93


>PA4133 [O] COG3278 Cbb3-type cytochrome oxidase, subunit 1 Pae
          Pseudomonas aeruginosa
          Length = 475

 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 39/43 (90%)

Query: 3  VPWLSFGRLRPLHTNAVIFAFGGCALMATSYYVVQRTCQVRLF 45
          +PW SFGRLRPLHTN VIFAFGGCAL ATSYY VQRTCQVRLF
Sbjct: 49 LPWTSFGRLRPLHTNLVIFAFGGCALFATSYYTVQRTCQVRLF 91


>NMB1725 [O] COG3278 Cbb3-type cytochrome oxidase, subunit 1 Nme Neisseria
          meningitidis MC58
          Length = 481

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 37/44 (84%)

Query: 4  PWLSFGRLRPLHTNAVIFAFGGCALMATSYYVVQRTCQVRLFXG 47
          PW  FGRLRPLHTNAVIFAFGGC L+ TSYYVVQRTC  RLF G
Sbjct: 52 PWFHFGRLRPLHTNAVIFAFGGCGLIGTSYYVVQRTCNTRLFGG 95


>NMA1980 [O] COG3278 Cbb3-type cytochrome oxidase, subunit 1 NmA Neisseria
          meningitidis Z2491
          Length = 481

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 37/44 (84%)

Query: 4  PWLSFGRLRPLHTNAVIFAFGGCALMATSYYVVQRTCQVRLFXG 47
          PW  FGRLRPLHTNAVIFAFGGC L+ TSYYVVQRTC  RLF G
Sbjct: 52 PWFHFGRLRPLHTNAVIFAFGGCGLIGTSYYVVQRTCNTRLFGG 95