BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0017.p (296 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA5382 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 295 6e-80 YPO1308 [K] COG0583 Transcriptional regulator Ype Yersinia pestis 273 4e-73 yeiE [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 266 3e-71 ZyeiE [K] COG0583 Transcriptional regulator EcZ Escherichia coli... 266 3e-71 ECs3049 [K] COG0583 Transcriptional regulator Ecs Escherichia co... 266 3e-71 >PA5382 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 297 Score = 295 bits (756), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 156/289 (53%), Positives = 197/289 (68%), Gaps = 2/289 (0%) Query: 1 LRQLQIFLAVAQSGSTTAAADLVALSQSAASAALNELEHLLGVQLFDRVGKRLVLNDSGR 60 RQLQIF AVA+ GSTTAAA+ ++LSQSA SAALNELE L +LFDRVGKRL LN+ GR Sbjct: 5 FRQLQIFCAVARCGSTTAAAESISLSQSATSAALNELESQLSTRLFDRVGKRLQLNEVGR 64 Query: 61 QLLPQARHMLDAAQTIERQFSDPEA-GSELHIGASTTIGSYMLPAMIAAYRKDHAGARVR 119 + LPQA +LD +E+QF+ A + L + AS+TIG+Y+LP ++A++ ++ G RV Sbjct: 65 RFLPQALRLLDGVAQLEQQFAVSAAPQASLTVAASSTIGNYVLPRLLASFEREQPGVRVN 124 Query: 120 ALVANTADIVDAVVNFEVDAGLIEGPCHADDVEVEPWMMDELIVVAAPRHPLVKSGRKIT 179 A + NT V VV F D GLIEGPCH + VEPW+ D LIVVAAP HPL S +++ Sbjct: 125 ASIGNTGSAVQDVVTFAADIGLIEGPCHEPGLRVEPWLEDSLIVVAAPGHPLA-SRTQVS 183 Query: 180 LKRLHEAEWLLREAGSGTREAVEHALIPYLHHLPSSFEFGNSEAIKRATAEGLGISCLSR 239 + L A WLLRE GSGTRE V HAL+ +LH+L S + G+SEAIK + A GLGISCLSR Sbjct: 184 REALRRARWLLREPGSGTREEVSHALLGHLHYLEDSLDLGSSEAIKHSVAAGLGISCLSR 243 Query: 240 AVVEDMIESRKLVELDTPLPTLRRHFYMVVSRHRAPSPSLGALLGFCRA 288 VVE+ + + LVEL + LP LRR FYM+ R + SP CRA Sbjct: 244 WVVEEQLATGALVELRSSLPPLRRRFYMLRQRDKFLSPGFERFWEHCRA 292 >YPO1308 [K] COG0583 Transcriptional regulator Ype Yersinia pestis Length = 290 Score = 273 bits (698), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 146/287 (50%), Positives = 194/287 (67%), Gaps = 4/287 (1%) Query: 1 LRQLQIFLAVAQSGSTTAAADLVALSQSAASAALNELEHLLGVQLFDRVGKRLVLNDSGR 60 LRQL++F V +SGSTT A+ ++ALSQSA SAAL +LE LGVQLFDRVGKRLV N+ GR Sbjct: 5 LRQLEVFTEVLKSGSTTQASVVLALSQSAVSAALADLEGQLGVQLFDRVGKRLVTNEHGR 64 Query: 61 QLLPQARHMLDAAQTIERQFSDPEAGSELHIGASTTIGSYMLPAMIAAYRKDHAGARVRA 120 L P+A +LD A IE+ F + G+ L I AS+TIG+YMLP MIA YR+D G + Sbjct: 65 LLYPKALALLDQAIEIEQLFLH-DLGA-LRIAASSTIGNYMLPGMIAKYRRDFPGTPLEL 122 Query: 121 LVANTADIVDAVVNFEVDAGLIEGPCHADDVEVEPWMMDELIVVAAPRHPLVKSGRKITL 180 + N+ D+++AV +F D GLIEGPCH ++ + W+ DEL+V AAP PL + +TL Sbjct: 123 NIGNSQDVIEAVADFRGDLGLIEGPCHMPELVTQNWLRDELVVFAAPDSPLCH--KALTL 180 Query: 181 KRLHEAEWLLREAGSGTREAVEHALIPYLHHLPSSFEFGNSEAIKRATAEGLGISCLSRA 240 L +A+W+LRE GSGTRE ++H L+ L H E GNSEAIKRA G+G+SCLSR Sbjct: 181 VDLADADWILRERGSGTREVLDHLLLAQLPHFKLVMELGNSEAIKRAVRYGMGVSCLSRR 240 Query: 241 VVEDMIESRKLVELDTPLPTLRRHFYMVVSRHRAPSPSLGALLGFCR 287 V+ D + S +LVEL+ PLP L R Y++ R + S +L L +C+ Sbjct: 241 VIADQLASGELVELNIPLPPLIRTLYLIHHRQKHISNALLRFLSYCQ 287 >yeiE [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 293 Score = 266 bits (681), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 142/286 (49%), Positives = 192/286 (67%), Gaps = 4/286 (1%) Query: 1 LRQLQIFLAVAQSGSTTAAADLVALSQSAASAALNELEHLLGVQLFDRVGKRLVLNDSGR 60 LRQL++F V +SGSTT A+ ++ALSQSA SAAL +LE LGVQLFDRVGKRLV+N+ GR Sbjct: 5 LRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVNEHGR 64 Query: 61 QLLPQARHMLDAAQTIERQFSDPEAGSELHIGASTTIGSYMLPAMIAAYRKDHAGARVRA 120 L P+A +L+ A IE+ F E + I AS+TIG+Y+LPA+IA YR D+ + Sbjct: 65 LLYPRALALLEQAVEIEQLFR--EDNGAIRIYASSTIGNYILPAVIARYRHDYPQLPIEL 122 Query: 121 LVANTADIVDAVVNFEVDAGLIEGPCHADDVEVEPWMMDELIVVAAPRHPLVKSGRKITL 180 V N+ D++ AV++F VD G IEGPCH+ ++ EPW+ DEL+V AAP PL + +TL Sbjct: 123 SVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLEDELVVFAAPTSPLARG--PVTL 180 Query: 181 KRLHEAEWLLREAGSGTREAVEHALIPYLHHLPSSFEFGNSEAIKRATAEGLGISCLSRA 240 ++L A W+LRE GSGTRE V++ L+ +L + E GNSEAIK A GLGISCLSR Sbjct: 181 EQLAAAPWILRERGSGTREIVDYLLLSHLPKFEMAMELGNSEAIKHAVRHGLGISCLSRR 240 Query: 241 VVEDMIESRKLVELDTPLPTLRRHFYMVVSRHRAPSPSLGALLGFC 286 V+ED +++ L E+ PLP L R + + R + S +L L +C Sbjct: 241 VIEDQLQAGTLSEVAVPLPRLMRTLWRIHHRQKHLSNALRRFLDYC 286 >ZyeiE [K] COG0583 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 293 Score = 266 bits (681), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 142/286 (49%), Positives = 192/286 (67%), Gaps = 4/286 (1%) Query: 1 LRQLQIFLAVAQSGSTTAAADLVALSQSAASAALNELEHLLGVQLFDRVGKRLVLNDSGR 60 LRQL++F V +SGSTT A+ ++ALSQSA SAAL +LE LGVQLFDRVGKRLV+N+ GR Sbjct: 5 LRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVNEHGR 64 Query: 61 QLLPQARHMLDAAQTIERQFSDPEAGSELHIGASTTIGSYMLPAMIAAYRKDHAGARVRA 120 L P+A +L+ A IE+ F E + I AS+TIG+Y+LPA+IA YR D+ + Sbjct: 65 LLYPRALALLEQAVEIEQLFR--EDNGAIRIYASSTIGNYILPAVIARYRHDYPQLPIEL 122 Query: 121 LVANTADIVDAVVNFEVDAGLIEGPCHADDVEVEPWMMDELIVVAAPRHPLVKSGRKITL 180 V N+ D++ AV++F VD G IEGPCH+ ++ EPW+ DEL+V AAP PL + +TL Sbjct: 123 SVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLEDELVVFAAPTSPLARG--PVTL 180 Query: 181 KRLHEAEWLLREAGSGTREAVEHALIPYLHHLPSSFEFGNSEAIKRATAEGLGISCLSRA 240 ++L A W+LRE GSGTRE V++ L+ +L + E GNSEAIK A GLGISCLSR Sbjct: 181 EQLAAAPWILRERGSGTREIVDYLLLSHLPKFEMAMELGNSEAIKHAVRHGLGISCLSRR 240 Query: 241 VVEDMIESRKLVELDTPLPTLRRHFYMVVSRHRAPSPSLGALLGFC 286 V+ED +++ L E+ PLP L R + + R + S +L L +C Sbjct: 241 VIEDQLQAGTLSEVAVPLPRLMRTLWRIHHRQKHLSNALRRFLDYC 286 >ECs3049 [K] COG0583 Transcriptional regulator Ecs Escherichia coli O157:H7 Length = 293 Score = 266 bits (681), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 142/286 (49%), Positives = 192/286 (67%), Gaps = 4/286 (1%) Query: 1 LRQLQIFLAVAQSGSTTAAADLVALSQSAASAALNELEHLLGVQLFDRVGKRLVLNDSGR 60 LRQL++F V +SGSTT A+ ++ALSQSA SAAL +LE LGVQLFDRVGKRLV+N+ GR Sbjct: 5 LRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVNEHGR 64 Query: 61 QLLPQARHMLDAAQTIERQFSDPEAGSELHIGASTTIGSYMLPAMIAAYRKDHAGARVRA 120 L P+A +L+ A IE+ F E + I AS+TIG+Y+LPA+IA YR D+ + Sbjct: 65 LLYPRALALLEQAVEIEQLFR--EDNGAIRIYASSTIGNYILPAVIARYRHDYPQLPIEL 122 Query: 121 LVANTADIVDAVVNFEVDAGLIEGPCHADDVEVEPWMMDELIVVAAPRHPLVKSGRKITL 180 V N+ D++ AV++F VD G IEGPCH+ ++ EPW+ DEL+V AAP PL + +TL Sbjct: 123 SVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLEDELVVFAAPTSPLARG--PVTL 180 Query: 181 KRLHEAEWLLREAGSGTREAVEHALIPYLHHLPSSFEFGNSEAIKRATAEGLGISCLSRA 240 ++L A W+LRE GSGTRE V++ L+ +L + E GNSEAIK A GLGISCLSR Sbjct: 181 EQLAAAPWILRERGSGTREIVDYLLLSHLPKFEMAMELGNSEAIKHAVRHGLGISCLSRR 240 Query: 241 VVEDMIESRKLVELDTPLPTLRRHFYMVVSRHRAPSPSLGALLGFC 286 V+ED +++ L E+ PLP L R + + R + S +L L +C Sbjct: 241 VIEDQLQAGTLSEVAVPLPRLMRTLWRIHHRQKHLSNALRRFLDYC 286