BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0097.p         (156 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0711 [K] COG0781 Transcription termination factor Rso Ralston...   194   8e-50
NMB0683 [K] COG0781 Transcription termination factor Nme Neisser...   134   8e-32
NMA0885 [K] COG0781 Transcription termination factor NmA Neisser...   134   1e-31
PA4052 [K] COG0781 Transcription termination factor Pae Pseudomo...   133   2e-31
PM0730 [K] COG0781 Transcription termination factor Pmu Pasteure...   114   9e-26

>RSc0711 [K] COG0781 Transcription termination factor Rso Ralstonia
           solanacearum
          Length = 161

 Score =  194 bits (492), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 112/152 (73%), Gaps = 4/152 (2%)

Query: 5   TQHANSNKNRTP----RHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 60
           TQ  +  K + P    R RARE ALQGLYQWLLN  D G +EAH+ +A GF+KAD  HFD
Sbjct: 8   TQDNSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHLHDAQGFNKADRAHFD 67

Query: 61  TLLTGAIRDAEKLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 120
            LL GAIR+   L     P +DRP+ ELSPVE AALL+GAYEL + ++IPYKVVINEAVE
Sbjct: 68  ALLHGAIREEATLTESFTPFLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVE 127

Query: 121 LTKSFGGIDGHKYVNGVLDRFAAQTRATEVEA 152
           L K+FGG++G+KYVNGVLD+ AAQ RA EV A
Sbjct: 128 LAKTFGGVEGYKYVNGVLDKLAAQVRAVEVAA 159


>NMB0683 [K] COG0781 Transcription termination factor Nme Neisseria
           meningitidis MC58
          Length = 141

 Score =  134 bits (337), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 66/136 (48%), Positives = 88/136 (64%)

Query: 14  RTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFDTLLTGAIRDAEKL 73
           +T R R+RE A+Q +YQ L+N   A  I  +IRE   F KAD E F+ L  G   +A + 
Sbjct: 2   KTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFAKADEELFNKLFFGTQTNAAEY 61

Query: 74  RAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVELTKSFGGIDGHKY 133
              + PL+DR  K+L+P+E A LL   +EL    E PY V+INEA+E+TK+FGG DGHK+
Sbjct: 62  IRQIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTDGHKF 121

Query: 134 VNGVLDRFAAQTRATE 149
           VNG+LD+ AAQ R  E
Sbjct: 122 VNGILDKLAAQIRPDE 137


>NMA0885 [K] COG0781 Transcription termination factor NmA Neisseria
           meningitidis Z2491
          Length = 141

 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/136 (48%), Positives = 88/136 (64%)

Query: 14  RTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFDTLLTGAIRDAEKL 73
           +T R R+RE A+Q +YQ L+N   A  I  +IRE   F KAD E F+ L  G   +A + 
Sbjct: 2   KTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMPDFAKADEELFNKLFFGTQTNAAEY 61

Query: 74  RAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVELTKSFGGIDGHKY 133
              + PL+DR  K+L+P+E A LL   +EL    E PY V+INEA+E+TK+FGG DGHK+
Sbjct: 62  IRQIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTDGHKF 121

Query: 134 VNGVLDRFAAQTRATE 149
           VNG+LD+ AAQ R  E
Sbjct: 122 VNGILDKLAAQIRPDE 137


>PA4052 [K] COG0781 Transcription termination factor Pae Pseudomonas
           aeruginosa
          Length = 159

 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/159 (42%), Positives = 93/159 (58%), Gaps = 4/159 (2%)

Query: 1   MSNK---TQHANSNKNRTP-RHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADA 56
           MSN+      A   K +T  R +AR  A+Q LY W +  +    IEA  R  + F + D 
Sbjct: 1   MSNQDSGNPAAKPPKGKTAARRKARSLAVQALYSWQIAGQPLHEIEAQFRTDNDFSEVDG 60

Query: 57  EHFDTLLTGAIRDAEKLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVIN 116
            +F  +L G  R   +L +   P +DRP+ E+ PVE A L +  YEL+N I++PYKVVIN
Sbjct: 61  AYFHEILHGVPRQKSELDSTFEPCLDRPLAEIDPVELAILRLSTYELRNRIDVPYKVVIN 120

Query: 117 EAVELTKSFGGIDGHKYVNGVLDRFAAQTRATEVEAAGR 155
           E +EL K+FG  DGHK+VNGVLD+ A + RA E+    R
Sbjct: 121 EGIELAKTFGATDGHKFVNGVLDKLAPRLRAAELRGGKR 159


>PM0730 [K] COG0781 Transcription termination factor Pmu Pasteurella
           multocida
          Length = 144

 Score =  114 bits (285), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 74/131 (56%)

Query: 12  KNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFDTLLTGAIRDAE 71
           K  +PR RARE A+Q LY W ++      IE +          D  +F  L      + +
Sbjct: 8   KKISPRRRARECAVQALYSWYVSQNSPAEIELNFMAEQDLKGVDTAYFRRLFRQTAENVD 67

Query: 72  KLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVELTKSFGGIDGH 131
            +   + P +DR + EL P+E A L +  YEL+  +++PYKVVINEA+E+ K FG  D H
Sbjct: 68  AVDNIMIPYLDREVSELDPIEKAILRLAVYELKFELDVPYKVVINEAIEVAKVFGAEDSH 127

Query: 132 KYVNGVLDRFA 142
           KYVNGVLD+ A
Sbjct: 128 KYVNGVLDKVA 138