BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0085.p (288 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2209 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 279 6e-75 yeeY [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 208 1e-53 ZyeeY [K] COG0583 Transcriptional regulator EcZ Escherichia coli... 207 2e-53 ECs2817 [K] COG0583 Transcriptional regulator Ecs Escherichia co... 207 2e-53 STM2069 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 203 4e-52 >RSc2209 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 300 Score = 279 bits (713), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 145/277 (52%), Positives = 191/277 (68%), Gaps = 5/277 (1%) Query: 3 LDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAGLQLLQEGRHLLLAANDLEQRVKR 62 L +VPSALTY VRKLEDDLDVLLFDRR HRA+LTPAG LL EGRHLL AA++L +RVKR Sbjct: 27 LGKVPSALTYVVRKLEDDLDVLLFDRRRHRAELTPAGRALLDEGRHLLQAADELARRVKR 86 Query: 63 TATGRETELHIVLNSLIPFDKMLPIIAAFDREQSGTRLRFTPGVLTGAWEKLIEGRANLV 122 ATG E L IV++ L+ F ++P+I F E + TRLRF VL G+W+ L+ GRA+L+ Sbjct: 87 LATGWEATLTIVMDDLVHFRALMPVIQDFYAENTATRLRFCREVLAGSWDALLSGRADLL 146 Query: 123 IGVTLDGPEVVRTSGRFQMQELGAVDWVFVVAPQHPLAGVEEPLSAELVRSHRAIAVGDN 182 I GP + Q + LG + +VF VA HPLA +EEPL A + HR +AVGD Sbjct: 147 I-----GPAHIAPVQGVQTRPLGEIPFVFAVAAHHPLAQLEEPLPASAIARHRIVAVGDT 201 Query: 183 SQSLPTLTMGLLSGQETLTVATVADKLQAQLAGLGCGHLPRIWAEPYLASGALVEKQTLA 242 S++LP T+G+++GQ+TL V +ADK+QAQ+ GLGCG LPR A+PYL SG LV K T+ Sbjct: 202 SRNLPPRTVGIMAGQDTLVVPAMADKVQAQIRGLGCGWLPRPLAQPYLDSGVLVAKATVE 261 Query: 243 AKPNDNFMVAWPKAEQGKSLKWFIQHLAQPHVRQSLI 279 + NF +AW +GK+L+W++ L P + Q+L+ Sbjct: 262 DRRAGNFQIAWRTNMRGKALQWWVDKLEDPRLAQALL 298 >yeeY [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 316 Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 108/263 (41%), Positives = 161/263 (61%), Gaps = 4/263 (1%) Query: 3 LDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAGLQLLQEGRHLLLAANDLEQRVKR 62 L + PSAL+Y+V KLE DL++ L DR GHRA+ T G LL++GR +L +LE++ + Sbjct: 34 LYKTPSALSYTVHKLESDLNIQLLDRSGHRAKFTRTGKMLLEKGREVLHTVRELEKQAIK 93 Query: 63 TATGRETELHIVLNSLIPFDKMLPIIAAFDREQSGTRLRFTPGVLTGAWEKLIEGRANLV 122 G E EL I ++ PF + P+I AF + S TRL+F GVL G+W+ L +GRA+++ Sbjct: 94 LHEGWENELVIGVDDTFPFSLLAPLIEAFYQHHSVTRLKFINGVLGGSWDALTQGRADII 153 Query: 123 IGVTLDGPEVVRTSGRFQMQELGAVDWVFVVAPQHPLAGVEEPLSAELVRSHRAIAVGDN 182 +G + P +S F LG ++ VF VAP HPLA EEPL+ +++ +RAI VGD Sbjct: 154 VGAMHEPP----SSSEFGFSRLGDLEQVFAVAPHHPLALEEEPLNRRIIKRYRAIVVGDT 209 Query: 183 SQSLPTLTMGLLSGQETLTVATVADKLQAQLAGLGCGHLPRIWAEPYLASGALVEKQTLA 242 +Q+ + LL QE +TV KL+ Q++GLGCG+LPR A+ +L SGAL+EK+ +A Sbjct: 210 AQAGASTASQLLDEQEAITVFDFKTKLELQISGLGCGYLPRYLAQRFLDSGALIEKKVVA 269 Query: 243 AKPNDNFMVAWPKAEQGKSLKWF 265 + + W + G + W+ Sbjct: 270 QTLFEPVWIGWNEQTAGLASGWW 292 >ZyeeY [K] COG0583 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 316 Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 4/263 (1%) Query: 3 LDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAGLQLLQEGRHLLLAANDLEQRVKR 62 L + PSAL+Y+V KLE DL++ L DR GHRA+ T G LL++GR +L +LE++ + Sbjct: 34 LYKTPSALSYTVHKLESDLNIQLLDRSGHRAKFTRTGKMLLEKGREVLHTVRELEKQAIK 93 Query: 63 TATGRETELHIVLNSLIPFDKMLPIIAAFDREQSGTRLRFTPGVLTGAWEKLIEGRANLV 122 G E EL I ++ PF + P+I AF + + TRL+F GVL G+W+ L +GRA+++ Sbjct: 94 LHEGWENELVIGVDDTFPFSLLAPLIEAFYQHHNVTRLKFINGVLGGSWDALTQGRADII 153 Query: 123 IGVTLDGPEVVRTSGRFQMQELGAVDWVFVVAPQHPLAGVEEPLSAELVRSHRAIAVGDN 182 +G + P +S F LG ++ VF VAP HPLA EEPL+ +++ +RAI VGD Sbjct: 154 VGAMHEPP----SSSEFGFSRLGDLEQVFAVAPHHPLAQEEEPLNRRIIKRYRAIVVGDT 209 Query: 183 SQSLPTLTMGLLSGQETLTVATVADKLQAQLAGLGCGHLPRIWAEPYLASGALVEKQTLA 242 +Q+ + LL QE +TV KL+ Q++GLGCG+LPR A+ +L SGAL+EK+ +A Sbjct: 210 AQAGASTASQLLDEQEAITVFDFKTKLELQISGLGCGYLPRYLAQRFLDSGALIEKKVVA 269 Query: 243 AKPNDNFMVAWPKAEQGKSLKWF 265 + + W + G + W+ Sbjct: 270 QTLFEPVWIGWNEQTAGLASGWW 292 >ECs2817 [K] COG0583 Transcriptional regulator Ecs Escherichia coli O157:H7 Length = 316 Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 4/263 (1%) Query: 3 LDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAGLQLLQEGRHLLLAANDLEQRVKR 62 L + PSAL+Y+V KLE DL++ L DR GHRA+ T G LL++GR +L +LE++ + Sbjct: 34 LYKTPSALSYTVHKLESDLNIQLLDRSGHRAKFTRTGKMLLEKGREVLHTVRELEKQAIK 93 Query: 63 TATGRETELHIVLNSLIPFDKMLPIIAAFDREQSGTRLRFTPGVLTGAWEKLIEGRANLV 122 G E EL I ++ PF + P+I AF + + TRL+F GVL G+W+ L +GRA+++ Sbjct: 94 LHEGWENELVIGVDDTFPFSLLAPLIEAFYQHHNVTRLKFINGVLGGSWDALTQGRADII 153 Query: 123 IGVTLDGPEVVRTSGRFQMQELGAVDWVFVVAPQHPLAGVEEPLSAELVRSHRAIAVGDN 182 +G + P +S F LG ++ VF VAP HPLA EEPL+ +++ +RAI VGD Sbjct: 154 VGAMHEPP----SSSEFGFSRLGDLEQVFAVAPHHPLAQEEEPLNRRIIKRYRAIVVGDT 209 Query: 183 SQSLPTLTMGLLSGQETLTVATVADKLQAQLAGLGCGHLPRIWAEPYLASGALVEKQTLA 242 +Q+ + LL QE +TV KL+ Q++GLGCG+LPR A+ +L SGAL+EK+ +A Sbjct: 210 AQAGASTASQLLDEQEAITVFDFKTKLELQISGLGCGYLPRYLAQRFLDSGALIEKKVVA 269 Query: 243 AKPNDNFMVAWPKAEQGKSLKWF 265 + + W + G + W+ Sbjct: 270 QTLFEPVWIGWNEQTAGLASGWW 292 >STM2069 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 304 Score = 203 bits (516), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 109/263 (41%), Positives = 157/263 (59%), Gaps = 4/263 (1%) Query: 3 LDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAGLQLLQEGRHLLLAANDLEQRVKR 62 L + PSAL+Y+V KLE+DL++ L DR GHRA+ T G LL++GR +L +LE++ + Sbjct: 27 LFKTPSALSYTVHKLENDLNIQLLDRSGHRARFTRTGKMLLEKGREVLHTVRELEKQAIK 86 Query: 63 TATGRETELHIVLNSLIPFDKMLPIIAAFDREQSGTRLRFTPGVLTGAWEKLIEGRANLV 122 G E EL I ++ PF + P+I AF + S TRL+F GVL G+WE L +GRA+++ Sbjct: 87 LHEGWENELVIGVDDTFPFSLLAPLIDAFYQRHSVTRLKFVNGVLGGSWETLTQGRADII 146 Query: 123 IGVTLDGPEVVRTSGRFQMQELGAVDWVFVVAPQHPLAGVEEPLSAELVRSHRAIAVGDN 182 +G P F LG ++ VF VAP HPL EEPLS + ++ RAI VGD+ Sbjct: 147 VGAMRAPP----PDTGFGFARLGDLELVFAVAPHHPLVHEEEPLSRQTIKRFRAIVVGDS 202 Query: 183 SQSLPTLTMGLLSGQETLTVATVADKLQAQLAGLGCGHLPRIWAEPYLASGALVEKQTLA 242 S ++ LL QE +TV KL+ Q++GLGCG+LPR A+ +L SGAL+EK+ +A Sbjct: 203 VHSSRSIGSELLDAQEAITVFDFKTKLELQISGLGCGYLPRYLAQRFLESGALIEKKVVA 262 Query: 243 AKPNDNFMVAWPKAEQGKSLKWF 265 + V W + G + W+ Sbjct: 263 QIVYEPVWVGWNEQTAGLASGWW 285