BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0053.p (300 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3473 [R] COG2962 Predicted permeases Pae Pseudomonas aeruginosa 211 2e-54 HI0223 [R] COG2962 Predicted permeases Hin Haemophilus influenzae 180 4e-45 HI0680 [R] COG2962 Predicted permeases Hin Haemophilus influenzae 162 7e-40 PM1281 [R] COG2962 Predicted permeases Pmu Pasteurella multocida 155 1e-37 STM3955 [R] COG2962 Predicted permeases Sty Salmonella typhimuri... 107 4e-23 >PA3473 [R] COG2962 Predicted permeases Pae Pseudomonas aeruginosa Length = 299 Score = 211 bits (537), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 142/292 (48%), Positives = 181/292 (61%), Gaps = 1/292 (0%) Query: 10 GRGVGLSVLASALFALLSGYTRLLAPLDGNDIFGWRILATAVAVLALIAWRGQLSRLRAA 69 G+GV LS+ AS LF L GY LL PLD + R++ + V L+ Q LRAA Sbjct: 5 GQGVLLSLAASVLFVTLPGYVHLLEPLDSLQVVAHRVVWSIPMVFLLVVATRQWPTLRAA 64 Query: 70 CAELLGSPGRCLLLLLMAALLGFQQWLFLWGSVNGQALEVSLGYFLLPLSMVLVGRLLYG 129 L P L AA++ Q +F+W + G+ LE+SLGYFLLPL+MVLVGR+ YG Sbjct: 65 WCRLFAEPWLLACFPLTAAMMLLQWGIFIWAPLAGKTLELSLGYFLLPLAMVLVGRVFYG 124 Query: 130 ERLNLLQRLAVLLACIGVAHEIWMTRSFSWPTLAVALGYPPYFILRRRLQLDSLMIFAVE 189 ERL LQ +AV A GV HE W+TR+FSW +L ALGYPPYF+LRRR+ +D+L F E Sbjct: 125 ERLTPLQAIAVACALAGVLHEFWLTRAFSWVSLVTALGYPPYFMLRRRMGVDALSGFVFE 184 Query: 190 L-LILALPALIAVALGDTLATTLRTPAMLLLLPGLGLLSMVALACYLRAGKLLPMGLFGV 248 + +L L LGD P + LLLP LGL+S +A + + +LLPMGLFG+ Sbjct: 185 MLFLLPLALAALYWLGDESQAFREAPRLWLLLPMLGLISALAFGAMMASSRLLPMGLFGI 244 Query: 249 LGYVEPILLVLVAIAVLGESLPLAQLGTYVPIWLAVLLTAMHSAKLMRQTPR 300 L YVEP+LL LVA+ LGE+ QL TY PIWLAVLLT SA+L+R+ R Sbjct: 245 LSYVEPVLLFLVAVLFLGEAFRPEQLWTYAPIWLAVLLTGWDSARLLRKQAR 296 >HI0223 [R] COG2962 Predicted permeases Hin Haemophilus influenzae Length = 300 Score = 180 bits (456), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 102/284 (35%), Positives = 171/284 (60%), Gaps = 2/284 (0%) Query: 9 IGRGVGLSVLASALFALLSGYTRLLAPLDGNDIFGWRILATAVAVL-ALIAWRGQLSRLR 67 + +G+ L + + LF +L ++ L PL G D+F WR+L +L L G S L Sbjct: 8 VTQGILLCIFSQCLFGILYLFSIWLQPLSGTDVFAWRMLTMIFGLLLILFPTIGCRSLLS 67 Query: 68 AACAELLGSPGRCLLLLLMAALLGFQQWLFLWGSVNGQALEVSLGYFLLPLSMVLVGRLL 127 L S R +L LL G Q WLF+W +NG+ + +++GYFL PL M ++G Sbjct: 68 LITTTLGKSWTRWVLFLLGTLDAGSQFWLFMWAPLNGEGINIAMGYFLFPLIMAVLGWAW 127 Query: 128 YGERLNLLQRLAVLLACIGVAHEIWMTRSFSWPTLAVALGYPPYFILRRRLQLDSLMIFA 187 ERL+ +Q++A+LLA GVAHE+W T+SFSW +L V YP Y++ R+ +++ +L Sbjct: 128 LKERLSFIQKIALLLAAAGVAHELWHTQSFSWTSLWVCTVYPFYYLSRKWMKIPALQGIT 187 Query: 188 VELLILALPALIAV-ALGDTLATTLRTPAMLLLLPGLGLLSMVALACYLRAGKLLPMGLF 246 ++++++++P I + + DTL+ + LLLP LG++S ++L+ L++ + +P+ +F Sbjct: 188 LDIILISIPCFIYILSQSDTLSLVTQEYRYWLLLPALGIVSAISLSANLKSSQQIPVSIF 247 Query: 247 GVLGYVEPILLVLVAIAVLGESLPLAQLGTYVPIWLAVLLTAMH 290 VL Y+EPILL L+A+ VL + + TYVPIWL++++ + Sbjct: 248 AVLSYIEPILLFLIAVFVLDNQITTSDYFTYVPIWLSLIVIGIE 291 >HI0680 [R] COG2962 Predicted permeases Hin Haemophilus influenzae Length = 298 Score = 162 bits (411), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 104/266 (39%), Positives = 149/266 (56%), Gaps = 6/266 (2%) Query: 11 RGVGLSVLASALFALLSGYTRLLAPLDGNDIFGWRILATAVAVLALIAWRGQLSRLRAAC 70 +G+ +S+LAS LF + ++ LL PL G DIFG+R++ T VL + Q + L Sbjct: 3 KGILVSLLASFLFGYMYYFSTLLKPLSGTDIFGYRMIFTFPFVLLSVTLFKQKAALIERL 62 Query: 71 AELLGSPGRCLLLLLMAALLGFQQWLFLWGSVNGQALEVSLGYFLLPLSMVLVGRLLYGE 130 + P L LL L+GFQ WLFLW NG +L VS GY LLP+ MV GR+ + E Sbjct: 63 KRIQKRPHLALSYLLCGLLMGFQMWLFLWAPNNGSSLSVSFGYLLLPIVMVAAGRVFFKE 122 Query: 131 RLNLLQRLAVLLACIGVAHEIWMTRSFSWPTLAVALGYPPYFILRRRLQLDSLMIFAVEL 190 R++ + +AV++A +GV I + SW + + LGY YF +R+ L+ L F +E+ Sbjct: 123 RISTFKFIAVIIATLGVISNIVLKGGLSWEAIVICLGYTAYFSIRKALKNTDLASFCLEM 182 Query: 191 LILALPALIAVALGDTLATTLRT-PAMLLLLPGLGLLSMVALACYLRAGKLLPMGLFGVL 249 L L +P I AL AT +T P + L LGL+S AL Y+ A +LPM L G+L Sbjct: 183 LSL-MPVSIYFALQTDFATVQQTNPFIWGXLVLLGLISGTALIAYVIASNMLPMNLLGLL 241 Query: 250 GYVEPILLVLVAI----AVLGESLPL 271 GYVE I+++ V+ + ES PL Sbjct: 242 GYVETIMMLCVSFLIGEQIDSESYPL 267 >PM1281 [R] COG2962 Predicted permeases Pmu Pasteurella multocida Length = 291 Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 113/291 (38%), Positives = 166/291 (57%), Gaps = 5/291 (1%) Query: 11 RGVGLSVLASALFALLSGYTRLLAPLDGNDIFGWRILATAVAVLALIAWRGQLSRLRAAC 70 +G+ LS+ AS LF L ++ LL PL G DIFG+RI+ T V+A + Q + Sbjct: 3 KGILLSLSASVLFGYLYYFSTLLQPLGGEDIFGFRIIFTLPFVIAAVFLFKQKQAVGQYF 62 Query: 71 AELLGSPGRCLLLLLMAALLGFQQWLFLWGSVNGQALEVSLGYFLLPLSMVLVGRLLYGE 130 + P L +A++G Q WLFLW NG AL VS GY LLPL+MVLVGRL++ E Sbjct: 63 VRIKQQPLLIFGFLFNSAMMGIQIWLFLWAPNNGSALSVSFGYLLLPLTMVLVGRLVFKE 122 Query: 131 RLNLLQRLAVLLACIGVAHEIWMTRSFSWPTLAVALGYPPYFILRRRLQLDSLMIFAVEL 190 ++ ++ LAV++A IGV I + SW L V+ GY YF R+ L+++ L F +E+ Sbjct: 123 HISRVKFLAVVIAAIGVFSNILLKGGLSWEALLVSFGYSTYFATRKILKINDLAGFCLEM 182 Query: 191 LILALPALIAVALG-DTLATTLRTPAMLLLLPGLGLLSMVALACYLRAGKLLPMGLFGVL 249 +L LP I A D A +LLLL LGL+S VAL Y+ A LLP+ + G+L Sbjct: 183 SLL-LPVCIYFAWQVDLQAVQQANENILLLLVLLGLISGVALNTYIVASSLLPINVLGLL 241 Query: 250 GYVEPILLVLVAIAVLGESLPLAQLGTYVPIWLAVLLTAMHSAKLMRQTPR 300 GY EPI+++ V+ ++GE L + ++ + ++++L S L+R R Sbjct: 242 GYAEPIMMLFVSF-LIGEQLDSETIPLFICLMISMIL--FMSEGLVRLKRR 289 >STM3955 [R] COG2962 Predicted permeases Sty Salmonella typhimurium LT2 Length = 294 Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 83/298 (27%), Positives = 151/298 (50%), Gaps = 7/298 (2%) Query: 4 MPHHEIGRGVGLSVLASALFALLSGYTRLLAPLDGNDIFGWRILATAVAVLALIAWRGQL 63 M + +GV L++ A ++ + Y +L+ + ++I R++ + ++AL++ + Sbjct: 1 MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVALLS----V 56 Query: 64 SRLRAACAELLGSPGRCLLLLLMAALLGFQQWLFLWGSVNGQALEVSLGYFLLPLSMVLV 123 SR LL +P + LL L A L+G LF+W N LE SLGYF+ PL +L+ Sbjct: 57 SRQWRQVKRLLKTPKKIFLLALSAVLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILL 116 Query: 124 GRLLYGERLNLLQRLAVLLACIGVAHEIWMTRSFSWPTLAVALGYPPYFILRRRLQLDSL 183 G + GER +Q LAV+LA GV ++W S L +A + Y ++R+++ +++ Sbjct: 117 GMIFLGERFRRMQWLAVILAVCGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQ 176 Query: 184 MIFAVELL-ILALPALIAVALGDTLATTLRTPAML--LLLPGLGLLSMVALACYLRAGKL 240 VE L +L + A+ + D+ + + A+ LLL G+++ + L C+ A Sbjct: 177 TGMLVETLWLLPVAAIYLFGIADSPTSHMGQNALSLNLLLMAAGVVTTIPLLCFTGAATR 236 Query: 241 LPMGLFGVLGYVEPILLVLVAIAVLGESLPLAQLGTYVPIWLAVLLTAMHSAKLMRQT 298 L + G Y+ P L+ L+A+ GE ++ T+ IW+A+ + M + R+ Sbjct: 237 LRLSTLGFFQYIGPTLMFLLAVTFYGEVPGADKMVTFAFIWVALAIFVMDAIYTQRKK 294