BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0039.p (668 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1094 [N] COG1345 Flagellar capping protein Pae Pseudomonas aer... 104 6e-22 ZfliD [N] COG1345 Flagellar capping protein EcZ Escherichia coli... 94 1e-18 ECs2663 [N] COG1345 Flagellar capping protein Ecs Escherichia co... 94 1e-18 fliD [N] COG1345 Flagellar capping protein Eco Escherichia coli K12 91 6e-18 YPO1841 [N] COG1345 Flagellar capping protein Ype Yersinia pestis 81 8e-15 >PA1094 [N] COG1345 Flagellar capping protein Pae Pseudomonas aeruginosa Length = 474 Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 134/263 (50%), Gaps = 41/263 (15%) Query: 391 RFSQGAVNLSVGARTISLKPASATAGAAPALADVARAINEA--KAGVSATVQREGQGDKA 448 +F+ G +N+SVG + PA + LA + AIN+A +AGVSAT+ + G Sbjct: 120 KFNSGTLNISVGDTKL---PAITVDSSNNTLAGMRDAINQAGKEAGVSATIITDNSG--- 173 Query: 449 VERLVLSAS----GSD---PVSLRGSGDYAVLA--------------ASAMGQLQKPQDA 487 RLVLS++ G D VS GSG L+ +A G + K + Sbjct: 174 -SRLVLSSTKTGDGKDIKVEVSDDGSGGNTSLSQLAFDPATAPKLSDGAAAGYVTKAANG 232 Query: 488 RLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKLTLAISNDSSGVGAAVNSFVNAFN 547 +++DG+ + SN++ D I GV+ ++ T A +TL +S D +GV V FV A+N Sbjct: 233 EITVDGLKRSIASNSVSDVIDGVSFDVKAVTEAGKPITLTVSRDDAGVKDNVKKFVEAYN 292 Query: 548 TLAKAMAEMTRQAPAKVRGQAGEQ-----GPLAGESMVRALTGELRNAVLASMPGNALGS 602 TL K + E T V + GE G L G++ VRAL +R+ ++AS ++ + Sbjct: 293 TLTKFINEQT------VVTKVGEDKNPVTGALLGDASVRALVNTMRSELIASNENGSVRN 346 Query: 603 LTAIGVGFKKDGTLDLDSARLAK 625 L A+G+ KDGTL++D +L K Sbjct: 347 LAALGITTTKDGTLEIDEKKLDK 369 Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 109/211 (51%), Gaps = 19/211 (9%) Query: 8 ISTSAGPLDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTYQNALAEL 67 IS G D +LVN++V++E ++ LA+ + ++A G+ +A++ +Q AL L Sbjct: 4 ISIGVGSTDYTDLVNKMVNLEGAAKTNQLATLEKTTTTRLTALGQFKSAISAFQTALTAL 63 Query: 68 TA-AKFSAQKAAVSNTG--RSSDGKSGNDAVSADINTDASTKAQAQII--QSAGFASGHL 122 + A F A+ A SN ++S +S AV+ ++ A + I Q+ + Sbjct: 64 NSNAVFMARTAKSSNEDILKASATQS---AVAGTYQIQVNSLATSSKIALQAIADPANAK 120 Query: 123 FKAGDSVAIKVGEAS-PSFITLKADATINGLRDTINAA--RAGVTASVVRDDAGDHLVLE 179 F +G ++ I VG+ P+ ++ T+ G+RD IN A AGV+A+++ D++G LVL Sbjct: 121 FNSG-TLNISVGDTKLPAITVDSSNNTLAGMRDAINQAGKEAGVSATIITDNSGSRLVLS 179 Query: 180 SNTAGTSKLLKVRA-------NNSLSAISFD 203 S G K +KV N SLS ++FD Sbjct: 180 STKTGDGKDIKVEVSDDGSGGNTSLSQLAFD 210 >ZfliD [N] COG1345 Flagellar capping protein EcZ Escherichia coli O157:H7 EDL933 Length = 465 Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 117/222 (52%), Gaps = 20/222 (9%) Query: 417 AAPALADVARAINEAKAGVSATVQREGQGDKAV----------ERLVLSASGSDPV-SLR 465 A +L+ + AIN AKAGVSA++ G GD + + LS SG D + S Sbjct: 143 ANSSLSGIRDAINNAKAGVSASIINVGNGDYRLSVTSNDTGLDNAMTLSVSGDDALQSFM 202 Query: 466 GSGDYAVLAAS-AMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKL 524 G Y A+S M Q+A+L+++ VAI +SNTI DA+ +TLNLN T T Sbjct: 203 G---YDASASSNGMEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVT--TGNQ 257 Query: 525 TLAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQ--APAKVRGQAGEQGPLAGESMVRA 582 TL I+ D+S A+ +VNA+N+L + +T+ A Q+ G L G+S +R Sbjct: 258 TLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRT 317 Query: 583 LTGELRNAVLASMPGNALGSLTAIGVGFK-KDGTLDLDSARL 623 + +L++ + ++ ++ +L IG+ DG L+LD+ +L Sbjct: 318 IQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKL 359 Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 120/216 (55%), Gaps = 15/216 (6%) Query: 15 LDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTYQNALAELTAAKFSA 74 LD++++++ L + + K+ LTP++++ SF A +SAYG L +ALTT+Q A L+ A Sbjct: 13 LDLSSILDSLTAAQ-KATLTPISNQQSSFTAKLSAYGTLKSALTTFQTANTALSKADL-- 69 Query: 75 QKAAVSNTGRSSDGKSGNDAVSADINTDASTKAQAQIIQSAGFASGH---LFKAGDSVAI 131 +A S+T S +GN A++ + AQAQ + + + + + I Sbjct: 70 -FSATSSTTAFSATTAGN-AIAGKYTISVTHLAQAQTLTTRTTRDDTKTAIATSDSKLTI 127 Query: 132 KV-GEASPSFITLK-ADATINGLRDTINAARAGVTASVVRDDAGDH-LVLESNTAG--TS 186 + G+ P I + A+++++G+RD IN A+AGV+AS++ GD+ L + SN G + Sbjct: 128 QQGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGDYRLSVTSNDTGLDNA 187 Query: 187 KLLKVRANNSL-SAISFDAQQSRPGAMTQTQAARDA 221 L V +++L S + +DA S G M + AA++A Sbjct: 188 MTLSVSGDDALQSFMGYDASASSNG-MEVSVAAQNA 222 >ECs2663 [N] COG1345 Flagellar capping protein Ecs Escherichia coli O157:H7 Length = 465 Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 117/222 (52%), Gaps = 20/222 (9%) Query: 417 AAPALADVARAINEAKAGVSATVQREGQGDKAV----------ERLVLSASGSDPV-SLR 465 A +L+ + AIN AKAGVSA++ G GD + + LS SG D + S Sbjct: 143 ANSSLSGIRDAINNAKAGVSASIINVGNGDYRLSVTSNDTGLDNAMTLSVSGDDALQSFM 202 Query: 466 GSGDYAVLAAS-AMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKL 524 G Y A+S M Q+A+L+++ VAI +SNTI DA+ +TLNLN T T Sbjct: 203 G---YDASASSNGMEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVT--TGNQ 257 Query: 525 TLAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQ--APAKVRGQAGEQGPLAGESMVRA 582 TL I+ D+S A+ +VNA+N+L + +T+ A Q+ G L G+S +R Sbjct: 258 TLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRT 317 Query: 583 LTGELRNAVLASMPGNALGSLTAIGVGFK-KDGTLDLDSARL 623 + +L++ + ++ ++ +L IG+ DG L+LD+ +L Sbjct: 318 IQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKL 359 Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 120/216 (55%), Gaps = 15/216 (6%) Query: 15 LDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTYQNALAELTAAKFSA 74 LD++++++ L + + K+ LTP++++ SF A +SAYG L +ALTT+Q A L+ A Sbjct: 13 LDLSSILDSLTAAQ-KATLTPISNQQSSFTAKLSAYGTLKSALTTFQTANTALSKADL-- 69 Query: 75 QKAAVSNTGRSSDGKSGNDAVSADINTDASTKAQAQIIQSAGFASGH---LFKAGDSVAI 131 +A S+T S +GN A++ + AQAQ + + + + + I Sbjct: 70 -FSATSSTTAFSATTAGN-AIAGKYTISVTHLAQAQTLTTRTTRDDTKTAIATSDSKLTI 127 Query: 132 KV-GEASPSFITLK-ADATINGLRDTINAARAGVTASVVRDDAGDH-LVLESNTAG--TS 186 + G+ P I + A+++++G+RD IN A+AGV+AS++ GD+ L + SN G + Sbjct: 128 QQGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGDYRLSVTSNDTGLDNA 187 Query: 187 KLLKVRANNSL-SAISFDAQQSRPGAMTQTQAARDA 221 L V +++L S + +DA S G M + AA++A Sbjct: 188 MTLSVSGDDALQSFMGYDASASSNG-MEVSVAAQNA 222 >fliD [N] COG1345 Flagellar capping protein Eco Escherichia coli K12 Length = 468 Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 118/222 (53%), Gaps = 20/222 (9%) Query: 417 AAPALADVARAINEAKAGVSATVQREGQG---------DKAVER-LVLSASGSDPV-SLR 465 A +L+ + AIN AKAGVSA++ G G D ++ + LS SG D + S Sbjct: 146 ANSSLSGIRDAINNAKAGVSASIINVGNGEYRLSVTSNDTGLDNAMTLSVSGDDALQSFM 205 Query: 466 GSGDYAVLAAS-AMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKL 524 G Y A+S M Q+A+L+++ VAI +SNTI DA+ +TLNLN T T Sbjct: 206 G---YDASASSNGMEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVT--TGNQ 260 Query: 525 TLAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQ--APAKVRGQAGEQGPLAGESMVRA 582 TL I+ D+S A+ +VNA+N+L + +T+ A Q+ G L G+S +R Sbjct: 261 TLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRT 320 Query: 583 LTGELRNAVLASMPGNALGSLTAIGVGFK-KDGTLDLDSARL 623 + +L++ + ++ ++ +L IG+ DG L+LD+ +L Sbjct: 321 IQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKL 362 >YPO1841 [N] COG1345 Flagellar capping protein Ype Yersinia pestis Length = 466 Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 10/164 (6%) Query: 461 PVSLRGSGDYAVLAASAMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSA 520 P S GSG A+ Q K +DA LS++GV+IT SNTI DA GVT+NL T Sbjct: 210 PSSTGGSG--------ALTQKVKAEDATLSVNGVSITRQSNTITDAPQGVTINLKAVTKE 261 Query: 521 TDKLTLAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKV-RGQAGEQGPLAGESM 579 L I D++ AA+ SFV+A+N+L +T+ + + Q+ G L G+ Sbjct: 262 GAPEQLTIVRDNTATKAAIQSFVDAYNSLQTTFGSLTKYTVVETGQDQSTSNGALVGDGT 321 Query: 580 VRALTGELRNAVLASMPGNALGSLTAIGVGFKKDGTLDLDSARL 623 +R++ +L++ + +S G+ L +L +IG+ DG L +++ +L Sbjct: 322 LRSIQTQLKSQLASSQSGD-LKTLASIGITQDLDGKLVINADKL 364