BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0036.p (391 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2094 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa... 153 6e-37 PA2051 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa... 147 3e-35 PA3900 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa... 134 4e-31 PA1911 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa... 125 2e-28 PA0471 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa... 121 4e-27 >PA2094 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae Pseudomonas aeruginosa Length = 318 Score = 153 bits (387), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 110/314 (35%), Positives = 161/314 (51%), Gaps = 10/314 (3%) Query: 5 EKIVEQAIEWMLQLEQGDLPPGERAAFEQWKAADPRHAMAYANLSQSVQQF-DVPRQVGA 63 ++IVE+AIEWM++L+ GD E A E+WKA HA + L S+ D P + Sbjct: 8 QRIVEEAIEWMVRLQSGDFSAAEGDALERWKALSSEHAEVFRQLLGSLAPLQDSPWRGQP 67 Query: 64 APVILRNTLQQKSKRRKALKRIAALAGLAVGAAALLDRVTPVAALTADLHTGTGQRQRTT 123 + +LR L+Q S RR+ + L L G A L V L +L TGTG+R+ Sbjct: 68 SATVLR-ALEQPSSRRRFVGGALGLFVLLAGGAGLERWVQAGMGLPGELATGTGERRDWL 126 Query: 124 LADGSIITLNARSAIDHLISPVLRQVRLLEGEIQVQIAAANALPFSIETVHGSVSATAGT 183 LADGS + LNARS + L+ R++ L G +++++ F+++ G V +G+ Sbjct: 127 LADGSRLRLNARSKVRPLLDGAQRRLELRRGAMRLEVKEDPRGAFALDCAAGRVDCASGS 186 Query: 184 LMLGLQPLRTDLVAQQAAALLRTRNGQHATLAAGQRTWFDQDEI--GAPRAAGGAENSWV 241 L+L + LV + +A L T G+ +AA + FD + P AG E++W Sbjct: 187 LLLAEERGAIRLVTLRGSARLTTGEGRQLAVAARRSLLFDAGGLLEQGPMQAG--EDAWA 244 Query: 242 EGYYTASDNSLEEVVAALRPYRKGLLRLDPAVAQLRISGAFPLDDTDRALS----ALPIT 297 G+ D SL V A RPY G+L+LD +A R+SG FPLDD +L +LPI Sbjct: 245 SGWLEVHDRSLAWVAEAFRPYLPGILQLDAEIAGNRVSGLFPLDDMHTSLDMLGRSLPIR 304 Query: 298 VNRVSPYXSNQRAA 311 V R S Y + R A Sbjct: 305 VLRYSDYWISLRPA 318 >PA2051 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae Pseudomonas aeruginosa Length = 317 Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 158/308 (51%), Gaps = 6/308 (1%) Query: 2 GKDEKIVEQAIEWMLQLEQGDLPPGERAAFEQWKAADPRHAMAYANLSQSVQQFDVPRQV 61 G+ E+I+++A +WM L+ G ER AF+QW+ AD H + LS +Q F Sbjct: 4 GRRERILDEAAQWMALLQSGHAGAEERLAFQQWRQADAEHGAVFDRLSLGLQSFRNEPLH 63 Query: 62 GAAPVILRNTLQQKSKRRKALKRIAALAGLAVGAAALLDRVTPVAA-LTADLHTGTGQRQ 120 G L L+ S RR+ L+R ALA V AL R+ V DL+TGTGQRQ Sbjct: 64 GLRAEQLIGALEAPSARRRFLQRSLALAAFGVATLAL-GRIGIVGFPWPGDLYTGTGQRQ 122 Query: 121 RTTLADGSIITLNARSAIDHLISPVLRQVRLLEGEIQVQIAAANALPFSIETVHGSVSAT 180 L DGS + L+ARS + R++RL EG + V +A A PF ++T G V A Sbjct: 123 SFRLEDGSQLVLDARSRVRPEFDGYRRRLRLREGRLLVDVARDPARPFVVDTGRGQVEAQ 182 Query: 181 AGTLMLGLQPLRTDLVAQQAAALLRTRNGQHATLAAGQRTWFDQDEIGAPRAAGGAENSW 240 + + +V ++ + T +G+ L GQ FD I A A G E++W Sbjct: 183 GTRFQVSDDGASSRVVVLESRVRITTADGRQCLLERGQSARFDASAILARGPAEGGESAW 242 Query: 241 VEGYYTASDNSLEEVVAALRPYRKGLLRLDPAVAQLRISGAFPLDDTDRALS----ALPI 296 ++G D L EV+ ALR YR+G++ + A LR+SG +PLDD+ AL+ +LPI Sbjct: 243 LDGRLEVRDRPLGEVLEALRAYRRGIISVADDAAALRVSGIYPLDDSGVALALLEQSLPI 302 Query: 297 TVNRVSPY 304 ++ PY Sbjct: 303 RLDYHGPY 310 >PA3900 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae Pseudomonas aeruginosa Length = 317 Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 154/304 (50%), Gaps = 11/304 (3%) Query: 6 KIVEQAIEWMLQLEQGDLPPGERAAFEQWKAADPRHAMAYANLSQSVQQFDVPRQVGAAP 65 ++ EQA+ W+++L+ G R A+++W+ A P H A+ ++ Q+ +G Sbjct: 12 QVAEQAVRWLVELQGGADDERLRQAWQRWRQAAPEHEQAWRHIEAVNQRLA---GIGTPL 68 Query: 66 VILRNTLQQKSKRRKALKRIAALAGLAVGAAAL-LDRVTPVAALTADLHTGTGQRQRTTL 124 + +RR+ALK + L LA G +A L + +AD TG G+R+R L Sbjct: 69 ALAAINAPHSPQRRRALKTL--LLVLAAGGSAWGLRESGSLQRWSADYATGVGERRRLAL 126 Query: 125 ADGSIITLNARSAIDHLISPVLRQVRLLEGEIQVQIAAANALPFSIETVHGSVSATAGTL 184 ADGS + LN+ +A+D R++ LL GEIQ+ + P + + G + Sbjct: 127 ADGSRLELNSDTAVDVRFDAGERRLLLLRGEIQLS-TGHDPRPLHVYSAEGRLRPVGTRF 185 Query: 185 MLGLQPLRTDLVAQQAAALLRTRNGQHATLAAGQRTWFDQDEIGAPRAAGGAENSWVEGY 244 + RT + + A + R GQ L +G++ FD++ +GAP+ +W +G Sbjct: 186 DVRQFAGRTRVAVHEGAVQVENRAGQGLLLPSGRQLDFDRERLGAPQPLPVGSGAWTDGM 245 Query: 245 YTASDNSLEEVVAALRPYRKGLLRLDPAVAQLRISGAFPLDDTDRAL----SALPITVNR 300 A+ L+E +A + YR G L DP + LRISG++PLDD++R L + LP+ V R Sbjct: 246 LVAAGMRLDEFLAEVARYRPGRLGCDPRIGGLRISGSYPLDDSERILATLPAVLPVEVRR 305 Query: 301 VSPY 304 V+ Y Sbjct: 306 VTRY 309 >PA1911 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae Pseudomonas aeruginosa Length = 316 Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 151/308 (49%), Gaps = 21/308 (6%) Query: 7 IVEQAIEWMLQLEQGDLPPGERAAFEQWKAADPRHAMAYANLSQSVQQFDVPRQVGAAPV 66 I+++A EW+++L+ R A QW+ P+HA A+ + +Q A P Sbjct: 13 ILDEAAEWLVRLQDSGCTDDTRQACAQWRQRSPQHAHAWERAERLLQCLGRLPPALALPT 72 Query: 67 ILRNTLQQKSKRRKALKRIA-ALAGLAVGAAALLDRVTPVAALTADLHTGTGQRQRTTLA 125 + R ++ RR+A+K +A L G ++G A + P+ AD TG G+++R TL Sbjct: 73 LGR---ERGLDRRRAIKHLALVLGGASLGLATW--QAEPLRDWLADQRTGVGEQRRLTLP 127 Query: 126 DGSIITLNARSAIDHLISPVLRQVRLLEGEIQVQIAAANALPFSIETVHGSVSATAGTLM 185 DGS++TLN SA+D R VRLL GEI V + A+ PF + T + A A Sbjct: 128 DGSLLTLNTDSAVDLAFDASQRLVRLLRGEIFVD-SRADPRPFRVATAEARLHAGAARF- 185 Query: 186 LGLQPLRTDLVAQQAAAL-----LRTRNGQHATLAAGQRTWFDQDEIGAPRAAGGAENSW 240 +R ++ A + A L L +G+ L +G+ D A G ++W Sbjct: 186 ----NVRQEMAATRVAVLAGRVELSPLHGRGRWLESGESVRLGADGEARRLAFDGLPDAW 241 Query: 241 VEGYYTASDNSLEEVVAALRPYRKGLLRLDPAVAQLRISGAFPLDDTDRALSAL----PI 296 G A L EV+A L YR+G+LR DP +A+L +SGA+PL D R L L P+ Sbjct: 242 TRGMLMADRMPLAEVLAELARYRRGVLRCDPQLARLAVSGAYPLLDLRRTLGMLQATYPL 301 Query: 297 TVNRVSPY 304 V V+ Y Sbjct: 302 KVRGVTDY 309 >PA0471 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae Pseudomonas aeruginosa Length = 323 Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 95/297 (31%), Positives = 144/297 (48%), Gaps = 15/297 (5%) Query: 6 KIVEQAIEWMLQLEQGDLPPGERAAFEQWKAADPRHAMAYANLSQSVQQFDVPRQVGAAP 65 +++++AI W L L+ G+ P + AF +W AA P H A+ L + AA Sbjct: 13 RVLDEAIAWQLLLDSGEAHPDDHRAFHRWYAAHPEHERAWEQLGGLDRHL-----ARAAN 67 Query: 66 VILRNTLQQKSKRRKALKRIAALAGLAVGAAALL-------DRVTPVAALTADLHTGTGQ 118 RN L + R K +R+ L G A+G L +R PV L AD ++ TG+ Sbjct: 68 GPARNALLSGNARFK--RRLRRLGGSALGLVLALGVGLGVANRYVPVRYLLADAYSATGE 125 Query: 119 RQRTTLADGSIITLNARSAIDHLISPVLRQVRLLEGEIQVQIAAANALPFSIETVHGSVS 178 ++ TL D + + LN+RSAID RQV LL GEI V+ A + PF + + G + Sbjct: 126 QRELTLPDATHVRLNSRSAIDVRFDGERRQVVLLAGEILVETAHGDPRPFVVSSADGDMR 185 Query: 179 ATAGTLMLGLQPLRTDLVAQQAAALLRTRN-GQHATLAAGQRTWFDQDEIGAPRAAGGAE 237 A ++ + T L Q+A R + + GQ+ + A AA Sbjct: 186 ALGTRFLVRREEPGTRLTVLQSAVAARAETLSEERVIKEGQQVLILPQGLQASEAAPALA 245 Query: 238 NSWVEGYYTASDNSLEEVVAALRPYRKGLLRLDPAVAQLRISGAFPLDDTDRALSAL 294 +W +G + L ++VA L Y LL++DP++A LR++G+FPL DT AL AL Sbjct: 246 GAWAQGMLVVENARLADLVAELGRYSPALLQVDPSIADLRVTGSFPLKDTRLALQAL 302