BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0026.p         (398 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3079 [R] COG1033 Predicted exporters of the RND superfamily Pa...   248   2e-65

>PA3079 [R] COG1033 Predicted exporters of the RND superfamily Pae
           Pseudomonas aeruginosa
          Length = 793

 Score =  248 bits (632), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 224/368 (60%), Gaps = 14/368 (3%)

Query: 13  LEASLFRLRIPILALLLAFTAVLSYFALQLRMDAGFEKQMPTHHEYIDTFKQYRDDVLG- 71
           LE  +F  R  ++ L +  +  L Y A Q+R    FEK +P  H +I    ++R+D+   
Sbjct: 15  LERLIFNNRPVVIFLCVLVSVFLFYQATQVRPSTSFEKMIPLEHPFIQKMLEHRNDLANL 74

Query: 72  ANRLNIVLRARHGSIWTKEGLTRLSEMTQAVMFLPNISRLGVQSLWTPNTFVNEITEEGF 131
            N + I + A +G I+TKE +  L ++   V ++P + R G++SLW+P+    E+TEEGF
Sbjct: 75  GNTVRISVEAVNGDIFTKEYMETLRQIHDEVFYIPGVDRSGLKSLWSPSVRWTEVTEEGF 134

Query: 132 RADPVIPGTVIPSALTPEIIEQIRNTAINGGFVGTLISRNQDSAMIVAEINEF--DAKGE 189
               VIP T   S   P  +E++RN  +  G +G L++ N  S+++   + E   + K +
Sbjct: 135 AGGEVIPQTYDGS---PRALEELRNNVLKSGQIGRLVANNFKSSIVDVPLLEMYPNPKNQ 191

Query: 190 ----KVDY--LYNKLLNDLRAKYE--NADFEVQIIGFAKQIGDVADGAEGVVKFCIMALL 241
               K+DY    ++L   +R KY+  N + +V I+GFAK++GD+ DG   VV F  + LL
Sbjct: 192 SELIKLDYRQFSHELEEKIRDKYQLQNPNVKVHIVGFAKKVGDLIDGLVMVVGFFGICLL 251

Query: 242 LTAIAVYWYCRSLPFTLLPVACSLVSLVWQFGTLRLLGYGLDPLAVLVPFLVFAIGVSHG 301
           +T + +YW+ + +  T+  +  +LV+++WQ G L L+G+GLDP ++LVPFL+FAIG+SHG
Sbjct: 252 ITLVLLYWFTKCIRSTIAVLITTLVAVLWQLGLLNLVGFGLDPYSMLVPFLIFAIGISHG 311

Query: 302 VQQINTIVRGIASGQSCEAAARASFKGLLIPGVLALVTALVSFVTLVMIPIPMVRELAIT 361
           VQ+IN I    +   +   AAR +F+ L +PG++A++   V F+TL++I I ++RELAI 
Sbjct: 312 VQKINGIALQSSGADNALMAARLTFRQLFLPGMIAILADAVGFITLLVIDIGVIRELAIG 371

Query: 362 ASIGVGVV 369
           ASIGV V+
Sbjct: 372 ASIGVAVI 379