BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0021.p         (109 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll2486 [K] COG1695 Predicted transcriptional regulators Mlo Mes...   125   3e-29
CC3408 Non COG                                                        120   1e-27
CAC0571 [K] COG1695 Predicted transcriptional regulators Cac Clo...   108   2e-24
lin0608 [K] COG1695 Predicted transcriptional regulators Lin Lis...    96   2e-20
BH0406 [K] COG1695 Predicted transcriptional regulators Bha Baci...    88   5e-18

>mll2486 [K] COG1695 Predicted transcriptional regulators Mlo Mesorhizobium
           loti
          Length = 108

 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 76/104 (73%)

Query: 1   MADHIPSQLKKGVLELCVLALLAQGDSYAYDLARNLAQAVDMGEGTIYPLMRRLQTDGLV 60
           M D I  QL+KG L+LCVLA+L++G+SY Y++A  L  AV+MGEGTIYPLMRR+Q DGLV
Sbjct: 1   MTDSILVQLRKGALDLCVLAVLSRGESYGYEIASTLVAAVNMGEGTIYPLMRRMQNDGLV 60

Query: 61  DSYQQESESGPSRKYYRLTEAGLLSLTAQKQDWQRFTASVNSIL 104
            +   ES SGP RKYYRLT  G  +  A ++DW+ F  +V+ +L
Sbjct: 61  ATRLVESSSGPPRKYYRLTPLGQQAFEAHRRDWRSFAGAVDRLL 104


>CC3408 Non COG
          Length = 108

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 81/105 (77%)

Query: 1   MADHIPSQLKKGVLELCVLALLAQGDSYAYDLARNLAQAVDMGEGTIYPLMRRLQTDGLV 60
           M + I  QLKKGVL LCVLALL+  DSYAY++A  L + +DMGEGTIYPLMRR+Q+DGLV
Sbjct: 1   MPETIEIQLKKGVLALCVLALLSHADSYAYEIASRLTRDIDMGEGTIYPLMRRMQSDGLV 60

Query: 61  DSYQQESESGPSRKYYRLTEAGLLSLTAQKQDWQRFTASVNSILG 105
           ++Y  ES+SGP RKYYRLT AG  SL  QK +W  F  +VN+I+G
Sbjct: 61  ETYLVESQSGPPRKYYRLTAAGRESLAQQKAEWTAFATAVNNIVG 105


>CAC0571 [K] COG1695 Predicted transcriptional regulators Cac Clostridium
           acetobutylicum
          Length = 107

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 67/98 (68%)

Query: 7   SQLKKGVLELCVLALLAQGDSYAYDLARNLAQAVDMGEGTIYPLMRRLQTDGLVDSYQQE 66
           +QLKKG+LELCVL++L + D Y Y+L   +++++++ EGTIYPL+RRL  +G   +Y QE
Sbjct: 3   TQLKKGILELCVLSILDRKDCYGYELVDEISKSIEISEGTIYPLLRRLSKEGFFTTYLQE 62

Query: 67  SESGPSRKYYRLTEAGLLSLTAQKQDWQRFTASVNSIL 104
           S  GP RKYY+LTE G        ++W  F   VNSIL
Sbjct: 63  STEGPPRKYYKLTELGREEKQKLVEEWMEFVEGVNSIL 100


>lin0608 [K] COG1695 Predicted transcriptional regulators Lin Listeria
           innocua
          Length = 110

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 62/101 (61%)

Query: 4   HIPSQLKKGVLELCVLALLAQGDSYAYDLARNLAQAVDMGEGTIYPLMRRLQTDGLVDSY 63
            +  Q KKGVLELC L L+ + D Y Y+LA  +++ +++ EG IYP++RRL  +    +Y
Sbjct: 2   EVNPQFKKGVLELCCLFLIQKKDCYGYELANQVSKYIEVAEGAIYPVLRRLVKEEYCSTY 61

Query: 64  QQESESGPSRKYYRLTEAGLLSLTAQKQDWQRFTASVNSIL 104
             ES  GPSRKYY+LT  G + L     +W  FT SV  +L
Sbjct: 62  LVESNEGPSRKYYQLTVKGEIYLNELISEWNNFTDSVAKLL 102


>BH0406 [K] COG1695 Predicted transcriptional regulators Bha Bacillus
           halodurans
          Length = 174

 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 68/101 (67%), Gaps = 1/101 (0%)

Query: 5   IPSQLKKGVLELCVLALLAQGDSYAYDLARNLAQ-AVDMGEGTIYPLMRRLQTDGLVDSY 63
           I SQL KG+LE C+LA++ +   Y Y+LA  L +  +++ EG+IYP++ RLQ + L+   
Sbjct: 68  IRSQLLKGILEGCILAVIRRQSVYGYELAVKLQEHGLEVSEGSIYPILLRLQKEKLIKGT 127

Query: 64  QQESESGPSRKYYRLTEAGLLSLTAQKQDWQRFTASVNSIL 104
            ++S +GP+RKYY LTE G+ +L   KQ+W++    V+ +L
Sbjct: 128 MKKSPTGPNRKYYVLTEDGMAALEQFKQNWEQLKTPVDGLL 168