BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0013.p (326 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr5196 [R] COG0693 Putative intracellular protease/amidase Mlo ... 266 5e-71 CC0208 [R] COG0693 Putative intracellular protease/amidase Ccr C... 181 2e-45 CC2960 Non COG 82 2e-15 mll5195 [K] COG4977 Transcriptional regulator containing an amid... 80 9e-15 SMb20215 [K] COG4977 Transcriptional regulator containing an ami... 76 9e-14 >mlr5196 [R] COG0693 Putative intracellular protease/amidase Mlo Mesorhizobium loti Length = 353 Score = 266 bits (680), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 147/316 (46%), Positives = 200/316 (63%), Gaps = 10/316 (3%) Query: 4 NIGTETTDLMIPHAILTRSGVADVVVVSPLAGSITLMPALSMTSQQTLDAFDAMHPEGAD 63 N GTETTD ++P+ IL R+ VADVV ++ G + L PAL + T AFDA HP+GAD Sbjct: 43 NDGTETTDYLMPYGILRRADVADVVALATRPGPMRLHPALQIEPDATTTAFDAEHPDGAD 102 Query: 64 YVIVPAFHGEGDARIIAWIKKQFAGDAFIAGICEGAKVLGKAGLLDGRDATTHWYAIDDL 123 YVIVPA + DA ++ WI+ Q A A + GIC GAKV+G +GLLDG+ ATTHWY++ +L Sbjct: 103 YVIVPAMMRDDDADVLEWIRSQAAKGAMVIGICAGAKVVGASGLLDGKRATTHWYSVGEL 162 Query: 124 RSAHPTLRWIRDRRYVVDRSVMTTTGVTASIPASLAIVEAIAGAAAARRLAAQLGLAGYS 183 R HPT+ ++ DRR+VVD+ V TTTG+TAS+P L ++EAIAG A + LGLA + Sbjct: 163 REKHPTIHYVADRRFVVDQGVATTTGITASMPMMLTLIEAIAGRDKAEAVGRDLGLAHWD 222 Query: 184 AQHESAGFQLEARHLWRVIANRAAFYLHEEVRILVEPGVDGIALALTADPWSRTYRSQAV 243 A+H+S F+ I N A HE++ I + G+D ++LAL AD WSRTYRS AV Sbjct: 223 ARHDSGAFKFTRPFALAAIGNTLAVLGHEQLGIPLTSGMDEVSLALVADAWSRTYRSGAV 282 Query: 244 LIA-QQSEVMSQDGLLLHAQPVQAD--ADKNSKASGLTLTLAGDIPPAAHLERSLGAISQ 300 A + S ++S+DGL + + D D+ A+ D PA L+++L IS Sbjct: 283 TFAGKDSAIVSRDGLRILPDQIATDWPVDRLVPAT-------ADPRPARALDQALQDISA 335 Query: 301 RYGRSTADLVALQLEY 316 R+G TAD VA+QLEY Sbjct: 336 RHGARTADFVAMQLEY 351 >CC0208 [R] COG0693 Putative intracellular protease/amidase Ccr Caulobacter vibrioides Length = 329 Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 124/320 (38%), Positives = 168/320 (52%), Gaps = 22/320 (6%) Query: 1 VADNIGTETTDLMIPHAILTRSGVADVVVVSPLAGSITLMPALSMTSQQTLDAFDAMHPE 60 +AD G ETTDL+ P+A+L SG DV VV+P + LMP + QT A P Sbjct: 26 LADQRGVETTDLIAPYAVLAESGAVDVRVVAPTLAPVRLMPGQAWVRPQTTYAALTRRP- 84 Query: 61 GADYVIVPAFHGEGDARIIAWIKKQFAGDAFIAGICEGAKVLGKAGLLDGRDATTHWYAI 120 D VIVP D AW++ Q A I IC GA+ L +AGLLDGR+ATTHWY + Sbjct: 85 --DVVIVPFLMPAYDPSRDAWLRAQAQAGARIVSICAGAETLARAGLLDGREATTHWYEL 142 Query: 121 DDLRSAHPTLRWIRDRRYVVDRSVMTTTGVTASIPASLAIVEAIAGAAAARRLAAQLGLA 180 + L A P +RW RD+R++VD V TT GVTASIPASLA++ +AG R A +L L Sbjct: 143 NRLAKAFPKVRWRRDQRWIVDGPVTTTAGVTASIPASLALLRDLAGDEVMRETATRLNLP 202 Query: 181 GYSAQHESAGFQLEARHLWRVIANRAAFYLHEEVRILVEPGVDGIALALTADPWSRTYRS 240 H+ A F++ +A + E+V + + G D +A A D WSRT RS Sbjct: 203 LPVQAHDGAAFRVGTDAAMSGLAGWLNAWRAEKVSVRIADGFDDLAFATALDAWSRTNRS 262 Query: 241 QAVLIAQQSEVMSQDGLLL--HAQPVQADADKNSKASGLTLTLAGDIPPAAHLERSLGAI 298 +A A +S S+ GL + A+P +A + K T +L AI Sbjct: 263 EA--FASRS-ATSRHGLTIIAPAKPPRAARTIDPKDGDPTT--------------ALKAI 305 Query: 299 SQRYGRSTADLVALQLEYAW 318 + YG++TA VAL LE+ + Sbjct: 306 AAAYGKATARYVALTLEHPY 325 >CC2960 Non COG Length = 312 Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 23/224 (10%) Query: 54 FDAMHPEGADYVIVPAFHGEGDARIIAWIKKQFAGDAFIAGICEGAKVLGKAGLLDGRDA 113 D + G D V VPA E +A++++ +A +C G VL +AGLLDG+ A Sbjct: 67 LDTLLIAGGDAVKVPASCPE----TLAFVRQAGRSARRVASVCSGTYVLAEAGLLDGKRA 122 Query: 114 TTHWYAIDDLRSAHPTLRWIRDRRYVVDRSVMTTTGVTASIPASLAIVEAIAGAAAARRL 173 TTHW D + +P +R DR ++ D +V ++ G+TA I SLA++ A G A ARR Sbjct: 123 TTHWSRTKDFQRRYPHVRLEPDRIWIQDGAVWSSAGITAGIDLSLALIGADEGEAVARRT 182 Query: 174 AAQLGLAGYSAQHESAGFQLEARHLWRVIANRAAFYLHEEVRILVEPGVDGIALALTADP 233 A QL H G Q + L + R L + L EP +++ AD Sbjct: 183 AQQL-----VVYHHRPGGQSQHSALIDLRPGRFDGLLSWARQNLSEP----LSVEQLADR 233 Query: 234 WSRTYRSQAVLIAQQSEVMSQDGL----------LLHAQPVQAD 267 + + R+ A L AQ++ V + LL +QP+Q + Sbjct: 234 AAMSPRNFARLFAQETGVTPAKAIERLRVEAARALLDSQPLQVE 277 >mll5195 [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Mlo Mesorhizobium loti Length = 325 Score = 79.7 bits (195), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 2/100 (2%) Query: 78 IIAWIKKQFAGDAFIAGICEGAKVLGKAGLLDGRDATTHWYAIDDLRSAHPTLRWIRDRR 137 I+AW+++ G A +C GA +L +AGLLDGR ATTHW++ D +P ++ +R Sbjct: 117 IVAWLRR--TGVRRTASVCTGAYLLAEAGLLDGRRATTHWWSTHDFARRYPAVKLDAERI 174 Query: 138 YVVDRSVMTTTGVTASIPASLAIVEAIAGAAAARRLAAQL 177 +V D SV T+ G++A I +LA++E G A ARR+A QL Sbjct: 175 FVRDGSVWTSAGISAGIDLALALIEDDLGPAIARRVAQQL 214 >SMb20215 [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Sme Sinorhizobium meliloti Length = 326 Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 12/170 (7%) Query: 78 IIAWIKKQFAGDAFIAGICEGAKVLGKAGLLDGRDATTHWYAIDDLRSAHPTLRWIRDRR 137 ++ + ++ F +A C GA VL ++GLLDGR ATTHW L+ P ++ DR Sbjct: 94 LVEFARRSFETARRVAAPCTGAFVLAESGLLDGRRATTHWAFARQLQDRFPAVKVEEDRI 153 Query: 138 YVVDRSVMTTTGVTASIPASLAIVEAIAGAAAARRLAAQLGL----AGYSAQHESAGFQL 193 ++VD SV T+ G+TASI +LA+VE G AR +A +L + AG +Q SA +L Sbjct: 154 FIVDGSVWTSAGMTASIDLALAMVEKDYGQGVARSVARKLVVYHRRAGGQSQF-SALLEL 212 Query: 194 EARHLWRVIANRAAFYLHEEVR--ILVEPGVDGIALALTADPWSRTYRSQ 241 E + R+ R+ Y +R + VE D A L+A +SR +R++ Sbjct: 213 EPKS-DRI--QRSIDYAKANLRRGLSVEELAD--AAGLSARQFSRAFRAE 257