BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0001.p (322 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4136 [GEPR] COG0477 Permeases of the major facilitator superfa... 99 1e-20 SA2145 [GEPR] COG0477 Permeases of the major facilitator superfa... 90 7e-18 RSc0216 [GEPR] COG0477 Permeases of the major facilitator superf... 88 2e-17 PM1533 [GEPR] COG0477 Permeases of the major facilitator superfa... 86 8e-17 VCA0083 [GEPR] COG0477 Permeases of the major facilitator superf... 86 1e-16 >PA4136 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae Pseudomonas aeruginosa Length = 402 Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 99/162 (61%) Query: 7 IVFMAQMATTLYLPSLPIVMRELAMSQSLVEMSISGFVVGAALPVLFWGTAADRWGRRGP 66 +V ++ +YLPSLP + +L S + V+ SISGF+VG + +LF+G +DR+GRR Sbjct: 24 LVAFGPLSIDMYLPSLPAIAADLGASDAQVQRSISGFLVGFCVGMLFYGPLSDRFGRRPV 83 Query: 67 LLASLALFVLCSALLAAVGSAVELLFLRVLQGIAAGGAAIIARIIVRDNWSGDELARRLS 126 LLA +AL++ S A SA +L+ LRVLQ + G A+++AR +VRD + E AR L+ Sbjct: 84 LLAGIALYLFSSLACALADSAGQLVLLRVLQALGGGAASVLARAMVRDLYPLGEAARMLA 143 Query: 127 VLSIAFITALGAGQFIGGLIGQYSHWQIGFVLMAVTGALAAL 168 ++ + + A A +GG + ++ W+ FV++A+ L L Sbjct: 144 LMHMVTMLAPLAAPLLGGYLMLWAGWRALFVVLALFAGLCLL 185 >SA2145 [GEPR] COG0477 Permeases of the major facilitator superfamily Sau Staphylococcus aureus N315 Length = 402 Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 107/196 (54%), Gaps = 6/196 (3%) Query: 13 MATTLYLPSLPIVMRELAMSQSLVEMSISGFVVGAALPVLFWGTAADRWGRRGPLLASLA 72 ++ ++LP LP + + + S ++++S F++G A LF G +D GRR PL+ ++ Sbjct: 27 LSIDMFLPGLPDIRHDFQTTTSNAQLTLSMFMIGLAFGNLFAGPISDSTGRRKPLIIAMI 86 Query: 73 LFVLCSALLAAVGSAVELLFLRVLQGIAAGGAAIIARIIVRDNWSGDELARRLSVLSIAF 132 +F L S + V + ++ LR LQG+ G AA+I+R I D +SG+EL + +++L + Sbjct: 87 IFTLASLGIVFVHNIWLMVALRFLQGVTGGAAAVISRAIASDMYSGNELTKFMALLMLVN 146 Query: 133 ITALGAGQFIGGLIGQYSHWQIGFVLMAVTGALAALLSM-----TLPLQGGRQAAARQGG 187 A IGG+I YS W++ FV++ + G + + S+ +L + ++ + Sbjct: 147 GIAPVVAPTIGGIILNYSVWRMVFVILTIFGFVMVIGSLLKVPESLTVTNRESSSGLKTM 206 Query: 188 NPYWQI-LRRPGFVRP 202 ++I L+ P FV P Sbjct: 207 FKNFKILLKTPRFVLP 222 >RSc0216 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso Ralstonia solanacearum Length = 409 Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 111/233 (47%), Gaps = 11/233 (4%) Query: 2 MLCCLIVFMA--QMATTLYLPSLPIVMRELAMSQSLVEMSISGFVVGAALPVLFWGTAAD 59 ML L + MA ++T LYLP++P + L S +E +ISG++VG +L L WG D Sbjct: 15 MLAVLSLLMAFASISTDLYLPAMPAMQATLGASAGALEWTISGYLVGFSLGQLLWGPIGD 74 Query: 60 RWGRRGPLLASLALFVLCSALLAAVGSAVELLFLRVLQGIAAGGAAIIARIIVRDNWSGD 119 R GRR P+ L LF+ SA A SA L+ R +Q A + ++AR +VRD + G+ Sbjct: 75 RTGRRLPIALGLLLFIGGSAGCALAASAPALIAWRAVQAAGACASVVLARAMVRDLYEGE 134 Query: 120 ELARRLSVLSIAFITALGAGQFIGGLIGQYSHWQIGFVLMAVTG--ALAAL--LSMTLPL 175 AR +S L A G GGLI + W+ F + + G LAA+ L TLP Sbjct: 135 RAARMMSTLMTVMAIAPLVGPSAGGLILKLWSWRAIFWTLVIVGLATLAAVGTLPETLPA 194 Query: 176 QGGRQAAARQGGNPYWQILRRP---GFVRPACAGLFPPFFKKKKNGPDFSEID 225 A + Y +LR P G++ G F G F+ ID Sbjct: 195 HRRNDAPLHRTLARYGVLLRHPRLLGYL--GVGGFFYGGMYAYVAGTPFAYID 245 >PM1533 [GEPR] COG0477 Permeases of the major facilitator superfamily Pmu Pasteurella multocida Length = 399 Score = 86.3 bits (212), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 89/158 (56%) Query: 13 MATTLYLPSLPIVMRELAMSQSLVEMSISGFVVGAALPVLFWGTAADRWGRRGPLLASLA 72 ++ +YLPSLP + + L S V++S+S F+ G + +LF+G +D++GRR LL + Sbjct: 27 LSIDMYLPSLPTIAKALHTSIEWVQLSVSTFLTGFCVGMLFYGPLSDKYGRRIILLIGMT 86 Query: 73 LFVLCSALLAAVGSAVELLFLRVLQGIAAGGAAIIARIIVRDNWSGDELARRLSVLSIAF 132 ++++ S + S +LL R LQ G ++ R IVRD++ + LS++ + Sbjct: 87 IYIVASIACSIATSIEQLLVARFLQAFGGGVGPVLGRAIVRDSFPPQRITHVLSMMQLVT 146 Query: 133 ITALGAGQFIGGLIGQYSHWQIGFVLMAVTGALAALLS 170 + A FIGG++ + W+ F+L+A+ G + L++ Sbjct: 147 MLAPLLAPFIGGIVLLWFGWETQFLLLALIGVVCWLIA 184 >VCA0083 [GEPR] COG0477 Permeases of the major facilitator superfamily Vch Vibrio cholerae Length = 403 Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 97/176 (55%), Gaps = 2/176 (1%) Query: 1 MMLCCLIVFMAQMATTLYLPSLPIVMRELAMSQSLVEMSISGFVVGAALPVLFWGTAADR 60 M+L +I+ Q+ ++YLPSLP++ R+L + Q+ +M ++ F++G LF+G +D Sbjct: 14 MLLAMMIIATGQVGVSIYLPSLPLISRDLQVDQASAQMLVTLFLLGFGGSQLFYGALSDA 73 Query: 61 WGRRGPLLASLALFVLCSALLAAVGSAVELL-FLRVLQGIAAGGAAIIARIIVRDNWSGD 119 GRR L +++L + L + + L F R+LQG+ AG A+++ R ++RD++ G Sbjct: 74 VGRRPTFLLGQGIYLLGTVLCVMMSDHFQALEFGRLLQGLGAGSASVLGRSVLRDSYDGF 133 Query: 120 ELARRLSVLSIAFITALGAGQFIGGLIGQYSHWQIGFV-LMAVTGALAALLSMTLP 174 L + LS LSI +GG + + WQ F+ ++ GA+ L M LP Sbjct: 134 HLTKALSYLSITASIMPIIAPVLGGWLAYHLSWQSVFIFVLLYIGAIFTLGLMILP 189