BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0009.p         (127 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

umuD [KT] COG1974 SOS-response transcriptional repressors (RecA-...    92   2e-19
ZumuD [KT] COG1974 SOS-response transcriptional repressors (RecA...    92   2e-19
ECs1678 [KT] COG1974 SOS-response transcriptional repressors (Re...    92   2e-19
STM1998 [KT] COG1974 SOS-response transcriptional repressors (Re...    89   3e-18
PSLT055 [KT] COG1974 SOS-response transcriptional repressors (Re...    88   4e-18

>umuD [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) Eco Escherichia coli K12
          Length = 139

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 1/118 (0%)

Query: 9   LHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRSVSPQ 68
           +  GFPSPAADY    +DLNQ L+   + T+    +G SM    I +GD ++VD +++  
Sbjct: 22  VQCGFPSPAADYVEQRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITAS 81

Query: 69  PGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVARKM 126
            G IV+A V+ EFT+K+L+L     +L P N  + PI     + L+VFGVV+ V + M
Sbjct: 82  HGDIVIAAVDGEFTVKKLQL-RPTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAM 138


>ZumuD [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) EcZ Escherichia coli O157:H7 EDL933
          Length = 139

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 1/118 (0%)

Query: 9   LHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRSVSPQ 68
           +  GFPSPAADY    +DLNQ L+   + T+    +G SM    I +GD ++VD +++  
Sbjct: 22  VQCGFPSPAADYVEQRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITAS 81

Query: 69  PGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVARKM 126
            G IV+A V+ EFT+K+L+L     +L P N  + PI     + L+VFGVV+ V + M
Sbjct: 82  HGDIVIAAVDGEFTVKKLQL-RPTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAM 138


>ECs1678 [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) Ecs Escherichia coli O157:H7
          Length = 139

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 1/118 (0%)

Query: 9   LHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRSVSPQ 68
           +  GFPSPAADY    +DLNQ L+   + T+    +G SM    I +GD ++VD +++  
Sbjct: 22  VQCGFPSPAADYVEQRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITAS 81

Query: 69  PGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVARKM 126
            G IV+A V+ EFT+K+L+L     +L P N  + PI     + L+VFGVV+ V + M
Sbjct: 82  HGDIVIAAVDGEFTVKKLQL-RPTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAM 138


>STM1998 [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) Sty Salmonella typhimurium LT2
          Length = 139

 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 71/119 (59%), Gaps = 1/119 (0%)

Query: 6   THKLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRSV 65
           ++ +  GFPSPAADY    +DLN+ LV   + T+    +G SM  A I +GD +VVD S 
Sbjct: 19  SYLVPCGFPSPAADYIEQRIDLNELLVSHPSSTYFVKASGDSMIEAGISDGDLLVVDSSR 78

Query: 66  SPQPGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVAR 124
           +   G IV+A +  EFT+KRL+L     +L P N  +RPI  G  + L++FGVV  + +
Sbjct: 79  NADHGDIVIAAIEGEFTVKRLQL-RPTVQLIPMNGAYRPIPVGSEDTLDIFGVVTFIIK 136


>PSLT055 [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) Sty Salmonella typhimurium LT2
          Length = 140

 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/120 (44%), Positives = 68/120 (56%), Gaps = 4/120 (3%)

Query: 6   THKLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRSV 65
           T +  AGFPSPAADYT + LDLN Y + R A TF     G SM    +  GD +VVD++ 
Sbjct: 20  TERCPAGFPSPAADYTEEELDLNAYCIRRPAATFFVRAIGDSMKEMGLHSGDLMVVDKAE 79

Query: 66  SPQPGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVARK 125
            P  G IV+A  + EFT+KRL+L      L P NP + P  +   E L++FGVV     K
Sbjct: 80  KPMQGDIVIAETDGEFTVKRLQL-KPRIALLPINPAY-PTLY--PEELQIFGVVTAFIHK 135