BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0006.p         (154 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4070 [K] COG2207 AraC-type DNA-binding domain-containing prote...    83   3e-16
PA4094 [K] COG2207 AraC-type DNA-binding domain-containing prote...    82   4e-16
Cgl2624 [K] COG2207 AraC-type DNA-binding domain-containing prot...    81   1e-15
Cgl2415 [K] COG2207 AraC-type DNA-binding domain-containing prot...    71   8e-13
feaR [K] COG2207 AraC-type DNA-binding domain-containing protein...    71   9e-13

>PA4070 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae
           Pseudomonas aeruginosa
          Length = 316

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 73/140 (52%), Gaps = 4/140 (2%)

Query: 19  GSVSRSTLELLGIAL---SGQLPSSTFGANAAMLRR-VQDYILQHLHEEDLNPTKVAEAN 74
           G++  + + LLG AL     +L     G     LRR  +  I Q L E  L+P  +A   
Sbjct: 176 GALQEALIALLGPALQHAGEELEGPLAGLYGYSLRRHAERLIEQSLQEPRLSPDMLAGRL 235

Query: 75  HISLRYLYMLFQRSDTTVSEYILHNRLHACKQALTDPAFKRIQISEIAFRWGFNSTSHFC 134
            IS+R LY LF+    +V  YIL  RL      L +P  +   I+ IAF+WGF+ ++HF 
Sbjct: 236 RISVRQLYRLFEEQGDSVCRYILRQRLSRSAADLGNPRLRGESITSIAFKWGFSDSAHFS 295

Query: 135 RTFKERYGAAPGDIRRQSLP 154
           R FK+++  +P D R  +LP
Sbjct: 296 RAFKKQFEVSPKDYRAGALP 315


>PA4094 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae
           Pseudomonas aeruginosa
          Length = 319

 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 2/116 (1%)

Query: 34  SGQLPSSTFGANAAMLRRVQDYILQHLHEEDLNPTKVAEANHISLRYLYMLFQRSDTTVS 93
           +G+  +S  GA+   L   + YI QHL E  L+  +VA A  +S R+L  LF +  ++  
Sbjct: 204 AGEHRASALGAS--YLLAAKQYIQQHLDEPALSCERVAAATGVSSRHLARLFAQEGSSPG 261

Query: 94  EYILHNRLHACKQALTDPAFKRIQISEIAFRWGFNSTSHFCRTFKERYGAAPGDIR 149
            Y+   RL   +Q L  P  +R+ ++E+A+R GF+S +HF R FK RYG  P + R
Sbjct: 262 RYLQERRLERARQLLASPQGRRLDVAEVAYRHGFSSQAHFARAFKARYGMTPSEAR 317


>Cgl2624 [K] COG2207 AraC-type DNA-binding domain-containing proteins Cgl
           Corynebacterium glutamicum
          Length = 310

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 62/106 (58%)

Query: 47  AMLRRVQDYILQHLHEEDLNPTKVAEANHISLRYLYMLFQRSDTTVSEYILHNRLHACKQ 106
            ++   Q +I  ++ E DL  +++A A  IS R L  +F  S  T+  Y+L+ RL   K+
Sbjct: 198 GLISAAQRFIDINISESDLQASRIAAAVGISERQLSRIFSDSGQTIGRYVLNTRLDFAKE 257

Query: 107 ALTDPAFKRIQISEIAFRWGFNSTSHFCRTFKERYGAAPGDIRRQS 152
           AL+ P   ++ +SEI  R+GF S SHF RTF+ER+   P   R++S
Sbjct: 258 ALSTPERDKVSVSEIGKRFGFASPSHFSRTFRERFEMTPLQWRKES 303


>Cgl2415 [K] COG2207 AraC-type DNA-binding domain-containing proteins Cgl
           Corynebacterium glutamicum
          Length = 187

 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 11/149 (7%)

Query: 13  LDQAVQGSV-----SRSTLELLGIA----LSGQL--PSSTFGANAAMLRRVQDYILQHLH 61
           L Q ++ S+     SR + E LG A    L+G +   ++ +  + A+   V  YI ++L 
Sbjct: 32  LTQLIESSIFDNVASRESSEFLGHAAIDLLAGLVYEKATPYAPDEALRVAVYGYIRENLG 91

Query: 62  EEDLNPTKVAEANHISLRYLYMLFQRSDTTVSEYILHNRLHACKQALTDPAFKRIQISEI 121
              L    VA A+ I++R L+ LF+     V+E I H RL A  + L DP  + + I  I
Sbjct: 92  SSQLTVAAVAGAHRIAVRTLHRLFEGEAYGVAELIRHLRLEAVYEDLRDPRLQNLTILAI 151

Query: 122 AFRWGFNSTSHFCRTFKERYGAAPGDIRR 150
             R G +S +H  R F+ +YG  P + RR
Sbjct: 152 GMRHGISSQAHLTRLFRAKYGVPPAEFRR 180


>feaR [K] COG2207 AraC-type DNA-binding domain-containing proteins Eco
           Escherichia coli K12
          Length = 301

 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 1/103 (0%)

Query: 49  LRRVQDYILQHLHEEDLNPTKVAEANHISLRYLYMLFQRSDTTVSEYILHNRLHACKQAL 108
            ++V   I  ++ EE L P  +A    +S+R LY +F      V++YI + RL  C  A+
Sbjct: 198 FQKVVTLIDDNIREEILRPEWIAGETGMSVRSLYRMFADKGLVVAQYIRNRRLDFCADAI 257

Query: 109 TDPAFKRIQISEIAFRWGFNSTSHFCRTFKERYGAAPGDIRRQ 151
              A    +++ I F WGF+  SHF   FK+R+G  PG+ RR+
Sbjct: 258 RHAADDE-KLAGIGFHWGFSDQSHFSTVFKQRFGMTPGEYRRK 299