BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0033.p         (292 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1187 [K] COG1158 Transcription termination factor Rso Ralston...   283   3e-76
NMB0617 [K] COG1158 Transcription termination factor Nme Neisser...   223   3e-58
NMA0825 [K] COG1158 Transcription termination factor NmA Neisser...   223   3e-58
PM1920 [K] COG1158 Transcription termination factor Pmu Pasteure...   209   4e-54
HI0295 [K] COG1158 Transcription termination factor Hin Haemophi...   209   4e-54

>RSc1187 [K] COG1158 Transcription termination factor Rso Ralstonia
           solanacearum
          Length = 420

 Score =  283 bits (725), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 131/160 (81%), Positives = 147/160 (91%)

Query: 1   MHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 60
           +HVS LLEMA  L+I+NA R+RKQELMFAILKK+AK GE IFGDG LEVLPDGFGFLRSP
Sbjct: 9   LHVSQLLEMAGQLEIDNAQRMRKQELMFAILKKKAKQGETIFGDGTLEVLPDGFGFLRSP 68

Query: 61  DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASK 120
           + SY+ASTDDIYISPSQIRRFNLHTGD+IEGEVRTPKDGERYFALVKVDKVN +PPEA K
Sbjct: 69  ETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNAQPPEAVK 128

Query: 121 HRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPV 160
           +RI+FENLTPLHPN+ L LERD++ EENITGRIID+IAP+
Sbjct: 129 NRIMFENLTPLHPNRTLTLERDIKAEENITGRIIDMIAPI 168


>NMB0617 [K] COG1158 Transcription termination factor Nme Neisseria
           meningitidis MC58
          Length = 419

 Score =  223 bits (569), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 102/160 (63%), Positives = 128/160 (80%)

Query: 1   MHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 60
           +H+S LLE+A    IENA R RKQ+L+FAI+++  K GE     G LE+LPDGFGFLRS 
Sbjct: 9   LHISKLLELAEEHGIENANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSA 68

Query: 61  DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASK 120
           D SY+A  DDIY+SP+QIRRFNLHTGD+IEG VR PKD ERYFALV++D +NG+ PE  +
Sbjct: 69  DTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTINGDHPEVCR 128

Query: 121 HRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPV 160
           H+ILFENLTPL P + L+LERD++ EEN+TGR IDLI+P+
Sbjct: 129 HKILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPI 168


>NMA0825 [K] COG1158 Transcription termination factor NmA Neisseria
           meningitidis Z2491
          Length = 419

 Score =  223 bits (569), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 102/160 (63%), Positives = 128/160 (80%)

Query: 1   MHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 60
           +H+S LLE+A    IENA R RKQ+L+FAI+++  K GE     G LE+LPDGFGFLRS 
Sbjct: 9   LHISKLLELAEEHGIENANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSA 68

Query: 61  DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASK 120
           D SY+A  DDIY+SP+QIRRFNLHTGD+IEG VR PKD ERYFALV++D +NG+ PE  +
Sbjct: 69  DTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTINGDHPEVCR 128

Query: 121 HRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPV 160
           H+ILFENLTPL P + L+LERD++ EEN+TGR IDLI+P+
Sbjct: 129 HKILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPI 168


>PM1920 [K] COG1158 Transcription termination factor Pmu Pasteurella
           multocida
          Length = 420

 Score =  209 bits (533), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 101/159 (63%), Positives = 128/159 (80%), Gaps = 1/159 (0%)

Query: 3   VSALLEMAI-SLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSPD 61
           VS L+E+    + +EN ARLRKQ+++FAILK+ AKSGE IFG G LE+LPDGFGFLRS D
Sbjct: 11  VSELVELGEGQMGLENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSAD 70

Query: 62  ASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASKH 121
           +SY+A  DDIY+SPSQIRRFNL TGD IEG++R PK+GERYFAL+KVD+VN + PE S+ 
Sbjct: 71  SSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDRPEVSRS 130

Query: 122 RILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPV 160
           +ILFENLTPLH N  L++ER     E++T RI+DL +P+
Sbjct: 131 KILFENLTPLHANSRLRMERGNGSTEDLTARILDLASPI 169


>HI0295 [K] COG1158 Transcription termination factor Hin Haemophilus
           influenzae
          Length = 420

 Score =  209 bits (533), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 101/169 (59%), Positives = 129/169 (76%), Gaps = 9/169 (5%)

Query: 1   MHVSALLEMAIS---------LDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLP 51
           MH++ L    +S         + +EN ARLRKQ+++FAILK+ AKSGE IFG G LE+LP
Sbjct: 1   MHLTELKNTPVSDLVKLGEEQMGLENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILP 60

Query: 52  DGFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKV 111
           DGFGFLRS D+SY+A  DDIY+SPSQIRRFNL TGD IEG++R PK+GERYFAL+KVD+V
Sbjct: 61  DGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQV 120

Query: 112 NGEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPV 160
           N + PE S+ +ILFENLTPLH N  L++ER     E++T RI+DL +P+
Sbjct: 121 NDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARILDLASPI 169