BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0032.p         (94 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1187 [K] COG1158 Transcription termination factor Rso Ralston...   181   3e-46
XF2699 [K] COG1158 Transcription termination factor Xfa Xylella ...   145   2e-35
NMA0825 [K] COG1158 Transcription termination factor NmA Neisser...   144   3e-35
NMB0617 [K] COG1158 Transcription termination factor Nme Neisser...   144   3e-35
VC0307 [K] COG1158 Transcription termination factor Vch Vibrio c...   139   1e-33

>RSc1187 [K] COG1158 Transcription termination factor Rso Ralstonia
           solanacearum
          Length = 420

 Score =  181 bits (460), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 83/94 (88%), Positives = 92/94 (97%)

Query: 1   MDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRREELLIKPDQLQKIWVLRKL 60
           MDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL+KSGTRREELLIKPD LQK+W+LRK 
Sbjct: 327 MDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIKPDILQKVWILRKF 386

Query: 61  MYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGN 94
           ++DMDE+EAMEF+LDK+KSTKNNAEFFDMMRRG+
Sbjct: 387 IHDMDEVEAMEFLLDKLKSTKNNAEFFDMMRRGS 420


>XF2699 [K] COG1158 Transcription termination factor Xfa Xylella fastidiosa
           9a5c
          Length = 411

 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/92 (71%), Positives = 83/92 (90%)

Query: 1   MDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRREELLIKPDQLQKIWVLRKL 60
           MD+VIYEEFKGTGN E+HL RR+AEKRVYPAI++++SGTRRE+LLI+ D LQKIW+LRKL
Sbjct: 320 MDEVIYEEFKGTGNCELHLNRRIAEKRVYPAIDINRSGTRREDLLIESDLLQKIWILRKL 379

Query: 61  MYDMDEIEAMEFILDKMKSTKNNAEFFDMMRR 92
           ++ MDEI A+EF+LDKMK+TK+N EFF  M+R
Sbjct: 380 LHPMDEIAAIEFVLDKMKNTKSNDEFFGSMKR 411


>NMA0825 [K] COG1158 Transcription termination factor NmA Neisseria
           meningitidis Z2491
          Length = 419

 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 84/91 (92%)

Query: 1   MDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRREELLIKPDQLQKIWVLRKL 60
           MDDVIYEEFKGTGNME+HL+RR+AEKR++PAIN++KSGTRREELL+  DQLQ++W+LRK 
Sbjct: 327 MDDVIYEEFKGTGNMELHLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKF 386

Query: 61  MYDMDEIEAMEFILDKMKSTKNNAEFFDMMR 91
           ++ MDEIEA EF++ K+K++KNN +FF++MR
Sbjct: 387 LHPMDEIEAAEFLIGKIKASKNNDDFFELMR 417


>NMB0617 [K] COG1158 Transcription termination factor Nme Neisseria
           meningitidis MC58
          Length = 419

 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 84/91 (92%)

Query: 1   MDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRREELLIKPDQLQKIWVLRKL 60
           MDDVIYEEFKGTGNME+HL+RR+AEKR++PAIN++KSGTRREELL+  DQLQ++W+LRK 
Sbjct: 327 MDDVIYEEFKGTGNMELHLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKF 386

Query: 61  MYDMDEIEAMEFILDKMKSTKNNAEFFDMMR 91
           ++ MDEIEA EF++ K+K++KNN +FF++MR
Sbjct: 387 LHPMDEIEAAEFLIGKIKASKNNDDFFELMR 417


>VC0307 [K] COG1158 Transcription termination factor Vch Vibrio cholerae
          Length = 419

 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 80/92 (86%)

Query: 1   MDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRREELLIKPDQLQKIWVLRKL 60
           MD+VIYEEFKGTGNME+HL R++AEKRV+PAI+ ++SGTRREELL K D+LQK+W+LRK+
Sbjct: 327 MDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKI 386

Query: 61  MYDMDEIEAMEFILDKMKSTKNNAEFFDMMRR 92
           ++ M E +AMEF++DK+  TK N EFFD MRR
Sbjct: 387 VHPMGETDAMEFLIDKLAMTKTNDEFFDAMRR 418