BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0022.p (272 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2544 [L] COG4974 Site-specific recombinase XerD Rso Ralstonia... 376 e-104 STM3044 [L] COG4974 Site-specific recombinase XerD Sty Salmonell... 283 2e-76 xerD [L] COG4974 Site-specific recombinase XerD Eco Escherichia ... 282 6e-76 ZxerD [L] COG4974 Site-specific recombinase XerD EcZ Escherichia... 280 3e-75 ECs3766 [L] COG4974 Site-specific recombinase XerD Ecs Escherich... 280 3e-75 >RSc2544 [L] COG4974 Site-specific recombinase XerD Rso Ralstonia solanacearum Length = 308 Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust. Identities = 196/295 (66%), Positives = 223/295 (75%), Gaps = 25/295 (8%) Query: 2 SREAIDEFCDSLWLEDGLSKNTLEAYRRDMTLYAHWLYQERAKALYETQAEDLNAYFAAR 61 S EAI FCD+LWLEDGL++NTL+AYRRD+TLYA WL R KAL +T+ DL+ YFAAR Sbjct: 15 STEAIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWL-AGRGKALDQTEDVDLSDYFAAR 73 Query: 62 HDQT---------SVFPR--------------PSRKARXARQPQRFPKTLSEGQVEALLA 98 H+ + +VF R P+R A+QP R PKTLSE QVEAL+A Sbjct: 74 HEDSLASTANRRRTVFKRFFQWALREHLVSADPTRLLSTAKQPPRVPKTLSEAQVEALIA 133 Query: 99 APDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTG-KGSKTRLVPFG 157 APDV PLGLRDRAMIELMYASGLRVSE+V LK++EVG+NEGV+RV G KG K RLVPFG Sbjct: 134 APDVDAPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKGGKDRLVPFG 193 Query: 158 EEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTARLSP 217 EAG WL RYL + R +L + DALFVTARG MTRQ FW LIK+YA +A + A LSP Sbjct: 194 AEAGDWLRRYLRDGRTALLGERTADALFVTARGDGMTRQAFWYLIKRYAQRADIHAPLSP 253 Query: 218 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 272 HTLRHAFATHLLNHGADLRVVQ+LLGHADISTTQIYTHVARERL+ LHA HHPRG Sbjct: 254 HTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPRG 308 >STM3044 [L] COG4974 Site-specific recombinase XerD Sty Salmonella typhimurium LT2 Length = 298 Score = 283 bits (725), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 154/292 (52%), Positives = 189/292 (64%), Gaps = 26/292 (8%) Query: 6 IDEFCDSLWLEDGLSKNTLEAYRRDMTLYAHWLYQERAKALYETQAEDLNAYFAAR---- 61 I++F D+LWLE L++NTL AYRRD+++ WL+ R K L QA+DL A R Sbjct: 8 IEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHH-RGKTLATAQADDLQTLLAERVEGG 66 Query: 62 HDQTS----------VFPR----------PSRKARXARQPQRFPKTLSEGQVEALLAAPD 101 + TS F PS + + PQR PK LSE QVE LL AP Sbjct: 67 YKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPL 126 Query: 102 VSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVPFGEEAG 161 + PL LRD+AM+E++YA+GLRVSELV L ++ + +GV+RV GKG+K RLVP GEEA Sbjct: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 Query: 162 SWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGV-TARLSPHTL 220 WL YL R +L G D LF + R MTRQ FW IK YA+ AG+ + +LSPH L Sbjct: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 Query: 221 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 272 RHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTHVA ERL+QLH HHPR Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >xerD [L] COG4974 Site-specific recombinase XerD Eco Escherichia coli K12 Length = 298 Score = 282 bits (721), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 153/292 (52%), Positives = 189/292 (64%), Gaps = 26/292 (8%) Query: 6 IDEFCDSLWLEDGLSKNTLEAYRRDMTLYAHWLYQERAKALYETQAEDLNAYFAAR---- 61 I++F D+LWLE L++NTL AYRRD+++ WL+ R L Q++DL A A R Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-RGLTLATAQSDDLQALLAERLEGG 66 Query: 62 HDQTS----------VF----------PRPSRKARXARQPQRFPKTLSEGQVEALLAAPD 101 + TS +F PS + PQR PK LSE QVE LL AP Sbjct: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Query: 102 VSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVPFGEEAG 161 + PL LRD+AM+E++YA+GLRVSELV L ++ + +GV+RV GKG+K RLVP GEEA Sbjct: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 Query: 162 SWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGV-TARLSPHTL 220 WL YL R +L G D LF + R MTRQ FW IK YA+ AG+ + +LSPH L Sbjct: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 Query: 221 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 272 RHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTHVA ERL+QLH HHPR Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >ZxerD [L] COG4974 Site-specific recombinase XerD EcZ Escherichia coli O157:H7 EDL933 Length = 298 Score = 280 bits (715), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 152/292 (52%), Positives = 188/292 (64%), Gaps = 26/292 (8%) Query: 6 IDEFCDSLWLEDGLSKNTLEAYRRDMTLYAHWLYQERAKALYETQAEDLNAYFAAR---- 61 I++F D+LWLE L++NTL AYRRD+++ WL+ R L Q++DL A A R Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-RGLTLATAQSDDLQALLAERLEGG 66 Query: 62 HDQTS----------VF----------PRPSRKARXARQPQRFPKTLSEGQVEALLAAPD 101 + TS +F PS + PQR PK LSE QVE LL AP Sbjct: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Query: 102 VSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVPFGEEAG 161 + PL LRD+AM+E++YA+GLRVSELV L ++ + +GV+RV GKG+K RLVP GEEA Sbjct: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 Query: 162 SWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGV-TARLSPHTL 220 WL YL R +L G D LF + R MTRQ W IK YA+ AG+ + +LSPH L Sbjct: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTLWHRIKHYAVLAGIDSEKLSPHVL 246 Query: 221 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 272 RHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTHVA ERL+QLH HHPR Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >ECs3766 [L] COG4974 Site-specific recombinase XerD Ecs Escherichia coli O157:H7 Length = 298 Score = 280 bits (715), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 152/292 (52%), Positives = 188/292 (64%), Gaps = 26/292 (8%) Query: 6 IDEFCDSLWLEDGLSKNTLEAYRRDMTLYAHWLYQERAKALYETQAEDLNAYFAAR---- 61 I++F D+LWLE L++NTL AYRRD+++ WL+ R L Q++DL A A R Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-RGLTLATAQSDDLQALLAERLEGG 66 Query: 62 HDQTS----------VF----------PRPSRKARXARQPQRFPKTLSEGQVEALLAAPD 101 + TS +F PS + PQR PK LSE QVE LL AP Sbjct: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Query: 102 VSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVPFGEEAG 161 + PL LRD+AM+E++YA+GLRVSELV L ++ + +GV+RV GKG+K RLVP GEEA Sbjct: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 Query: 162 SWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGV-TARLSPHTL 220 WL YL R +L G D LF + R MTRQ W IK YA+ AG+ + +LSPH L Sbjct: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTLWHRIKHYAVLAGIDSEKLSPHVL 246 Query: 221 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 272 RHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTHVA ERL+QLH HHPR Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298