BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0021.p         (160 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2543 [L] COG0350 Methylated DNA-protein cysteine methyltransf...   179   2e-45
TM0887 [L] COG0350 Methylated DNA-protein cysteine methyltransfe...    95   8e-20
Cj0836 [L] COG0350 Methylated DNA-protein cysteine methyltransfe...    92   3e-19
CAC3261 [L] COG0350 Methylated DNA-protein cysteine methyltransf...    83   2e-16
YPO2299 [L] COG0350 Methylated DNA-protein cysteine methyltransf...    82   4e-16

>RSc2543 [L] COG0350 Methylated DNA-protein cysteine methyltransferase Rso
           Ralstonia solanacearum
          Length = 173

 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/153 (56%), Positives = 106/153 (69%), Gaps = 1/153 (0%)

Query: 5   FSAVVHTPFGGMGVRTEAGALVEMVYLPPHYAEKDATDAVAAQAVQQITHYLADPAYRFD 64
           F AV+  PFG +GVR   GAL E+VYLP      D+   +  +   Q+  Y  +    FD
Sbjct: 19  FDAVLEAPFGKLGVRVVEGALWEIVYLPDSARTVDSAAPLIRRLAHQLDAYYDNADAVFD 78

Query: 65  LPRLSVGSAFQQRVWQAIMTIPCGQVLTYGQVAKRIQSAPRAVGQACGANWYPLVIPCHR 124
           +P    G+ FQ RVW AI  +P G V TYG +AK+I+SAPRAVGQACGANWYP++IPCHR
Sbjct: 79  VPLTHTGTGFQHRVWDAICAVPRGAVTTYGTLAKQIRSAPRAVGQACGANWYPILIPCHR 138

Query: 125 VTAAGGLGGFSHHDAEDGFHLEVKRWLLRHEGV 157
           V +A G+GGFS+HD EDGFHL VKRWLLRHEGV
Sbjct: 139 VVSASGIGGFSNHD-EDGFHLNVKRWLLRHEGV 170


>TM0887 [L] COG0350 Methylated DNA-protein cysteine methyltransferase Tma
           Thermotoga maritima
          Length = 139

 Score = 94.7 bits (234), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 72/122 (59%), Gaps = 7/122 (5%)

Query: 14  GGMGVRTEAGALVEMVYLPPHYAEKDATDAVAAQAVQQITHYLADPAYRFDLPRLSVGSA 73
           G + V+TE G +V+++       E + ++ +    +++I  YL+     F       G+ 
Sbjct: 8   GNISVQTENGKVVKIIL---GSNETEGSEEI----LREIEEYLSGQRKSFSFQVEIRGTP 60

Query: 74  FQQRVWQAIMTIPCGQVLTYGQVAKRIQSAPRAVGQACGANWYPLVIPCHRVTAAGGLGG 133
           FQ+RVW+ +  IP G+  TY ++AK++ ++PRAVGQA   N  PL IPCHRV +  GLGG
Sbjct: 61  FQKRVWEEVRKIPYGETKTYSEIAKKLGTSPRAVGQALSKNPLPLYIPCHRVVSKKGLGG 120

Query: 134 FS 135
           FS
Sbjct: 121 FS 122


>Cj0836 [L] COG0350 Methylated DNA-protein cysteine methyltransferase Cje
           Campylobacter jejuni
          Length = 150

 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 11/156 (7%)

Query: 4   LFSAVVHTPFGGMGVRTEAGALVEMVYLPPHYAEKDATDAVAAQAVQQITHYLADPAYRF 63
           +F      P   + + ++   L  + +     +EK+ +  +   A  ++  Y      +F
Sbjct: 1   MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCS--LLDLAKYELDLYFTHKLRKF 58

Query: 64  DLPRLSVGSAFQQRVWQAIMTIPCGQVLTYGQVAKRIQ--SAPRAVGQACGANWYPLVIP 121
            +P L  G+ F+ +V++A+M IP G++ TY  +A++I    A RAVG A   N  P+ IP
Sbjct: 59  SIPVLIQGTDFESKVYKALMEIPYGKIATYKDIAEKINHPKAFRAVGNANSKNQIPIFIP 118

Query: 122 CHRVTAAGGLGGFSHHDAEDGFHLEVKRWLLRHEGV 157
           CHRV A+ G+GG++         LE+KR+LL +EGV
Sbjct: 119 CHRVIASNGIGGYNG-------GLEIKRFLLENEGV 147


>CAC3261 [L] COG0350 Methylated DNA-protein cysteine methyltransferase Cac
           Clostridium acetobutylicum
          Length = 155

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 11/152 (7%)

Query: 7   AVVHTPFGGMGVRTEAGALVEMVYLPPHYAEKDATDAVAAQAVQQITHYLADPAYRFDLP 66
           A   +P G + ++     + E+ ++     E   +D + A A+ QI  Y      +F L 
Sbjct: 8   AYYKSPIGNLEIKALDEKVSEINFVEAMGEENFQSDVLKA-ALIQIDEYFRGKRKQFHLR 66

Query: 67  RLSVGSAFQQRVWQAIMTIPCGQVLTYGQVAKRI--QSAPRAVGQACGANWYPLVIPCHR 124
               G+ FQ++VW  +  I  G+V++YG+VAK I  ++A RAVG A   N  P++IPCHR
Sbjct: 67  LFIDGTEFQKKVWNELTRISYGEVVSYGEVAKAIGNKNASRAVGGANNKNKIPIIIPCHR 126

Query: 125 VTAAGG-LGGFSHHDAEDGFHLEVKRWLLRHE 155
           V  + G L G+      DG  +  K+WLL HE
Sbjct: 127 VIGSDGRLIGY------DG-GIWRKKWLLEHE 151


>YPO2299 [L] COG0350 Methylated DNA-protein cysteine methyltransferase Ype
           Yersinia pestis
          Length = 172

 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 66/111 (59%), Gaps = 11/111 (9%)

Query: 50  QQITHYLADPAYRFD-LPRLSVGSAFQQRVWQAIMTIPCGQVLTYGQVAKRIQ--SAPRA 106
           + +  Y A      D LP  + G+ FQ++VWQ +  IPCG+ ++YG++AKRI   +A RA
Sbjct: 64  ESMQRYFAGELSIIDTLPVKTAGTDFQRQVWQELRKIPCGETISYGELAKRINRPTASRA 123

Query: 107 VGQACGANWYPLVIPCHRVTAA-GGLGGFSHHDAEDGFHLEVKRWLLRHEG 156
           VG A G N   +V+PCHRV  + G L G++         ++ KRWLL HEG
Sbjct: 124 VGMANGLNPISIVVPCHRVIGSQGALTGYAG-------GVDRKRWLLVHEG 167