BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0014.p         (49 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1597 [T] COG4566 Response regulator Rso Ralstonia solanacearum      60   1e-09

>RSc1597 [T] COG4566 Response regulator Rso Ralstonia solanacearum
          Length = 210

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query: 1   VLDLILAGKMNKVIADELGISMRTVEVHRAHIFDKMNVKTAVELARL 47
           VL+ I+AG++NK IAD+LGIS++TVE HRA+I +K+NV T  +L RL
Sbjct: 159 VLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRL 205