BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0008.p (995 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1545 [T] COG5001 Predicted signal transduction protein contai... 278 5e-74 AGl1027 [T] COG5001 Predicted signal transduction protein contai... 246 2e-64 Z2221m_3 [T] COG2200 FOG EcZ Escherichia coli O157:H7 EDL933 245 4e-64 ECs2093_2 [T] COG2200 FOG Ecs Escherichia coli O157:H7 245 5e-64 yddU_3 [T] COG2200 FOG Eco Escherichia coli K12 241 5e-63 >RSc1545 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Rso Ralstonia solanacearum Length = 776 Score = 278 bits (710), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 168/435 (38%), Positives = 241/435 (55%), Gaps = 10/435 (2%) Query: 535 ALAIEREDARARIHQLAFYDSLTGLPNRSLLLVQAGQAIAAAERNCSTVAVMFIDLDRFK 594 AL + +A RI QLA YD+LTGL NR+ Q +AA E + + +++IDLD FK Sbjct: 326 ALVTKEVEAENRIRQLAHYDTLTGLANRTNFREQLDARLAAPE---ARLGLLYIDLDGFK 382 Query: 595 QVNDSLGHQAGDELLRTVATRLQSQARRSDI-VGRLSGDEFVVVLTQYDTQHLTEVVKRI 653 VND+ GH+AGD LL VA RL++ R + + RL GDEF V++ D + + Sbjct: 383 LVNDTKGHRAGDALLERVAQRLRAVCDRPGMAIARLGGDEFAVLVPHDDADRAATLATAL 442 Query: 654 QERLAMPCHINGTP-LNPSASIGVAIFPDNGNDIETLLHRADIAMYQAKAVNRGRFSFFS 712 E L P + + ASIG+A+ P +G D E LL RADIA+Y AKA +G F Sbjct: 443 IEALGAPYALGADQNVRIGASIGIALAPAHGRDTENLLARADIALYAAKAAGKGLARLFC 502 Query: 713 EEMNSMAQERLALESALRDALRGGD-LELNFQPQIKLHDQSLHGVEALARWHHPQLGQIS 771 +M + Q R LE+ LR AL D L + +QP + + + EAL RWHH + G + Sbjct: 503 ADMETRIQARALLEAQLRAALEHQDRLFVFYQPIVDVATGKVTAREALVRWHHAERGWVP 562 Query: 772 PGRFIPIAEECGLIGELGKWALEEACFQLSDWRRRGIQVPSISVNLSATNFHDLDLPQFV 831 P F+PIAE+ GLI +LG++ L AC + + W ++VN+S L Q V Sbjct: 563 PDEFVPIAEQSGLIDQLGRFVLHRACREATRWEDGA----RVAVNVSPMQLGKATLAQTV 618 Query: 832 TGLLRRYALEPSDLTLEITETVLMDTNPSTSQTIAAVHALGIPLAMDDFGTGYSSLGYLR 891 L L P L +E+TET L+ + + + ++ +G+ +A+DDFGTGYSSL +LR Sbjct: 619 HAALIDSGLAPDRLEIEVTETALIQNEAESFEDLRQLYDMGVRVALDDFGTGYSSLAHLR 678 Query: 892 KLPVSELKLDQSFVRDMAKDPAVSALTNAVIRIGESLKLTVVAEGVEDAEQYALLISQGC 951 P ++K+D+SFVRD+ + P + L A+ +G L +T VAEGVE + GC Sbjct: 679 AFPFDKIKIDRSFVRDLLERPDSAVLVRAIADLGRQLGVTTVAEGVETQAHVRGIREAGC 738 Query: 952 DVAQGYLFSRPMSAD 966 AQGY + RP +D Sbjct: 739 TEAQGYYYGRPAPSD 753 >AGl1027 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 648 Score = 246 bits (628), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 164/478 (34%), Positives = 235/478 (49%), Gaps = 26/478 (5%) Query: 505 VIGTFGFYYRHPGQPS----AFHHLLVEAGLHLCALAIEREDARARIHQ----------- 549 V G F ++ QP+ A + LLV AG+ L R R I Q Sbjct: 159 VNGAFIAFFVASRQPTFIAIAINVLLVCAGMMSILLTNYRNFERMVISQQRTEALSNENL 218 Query: 550 -LAFYDSLTGLPNRSLLLVQAGQAIAAAERNCSTVAVMFIDLDRFKQVNDSLGHQAGDEL 608 LA DSLTGLPNR +A A + +A+ IDLD FK VND GH GD L Sbjct: 219 LLANIDSLTGLPNRRAFFAHLEVELANAREKGTRLALGVIDLDGFKPVNDLYGHSVGDRL 278 Query: 609 LRTVATRLQSQARRSDIVGRLSGDEFVVVLTQY-DTQHLTEVVKRIQERLAMPCHINGTP 667 L V+ RL + + S RL GDEF +V D L I E L P H+ Sbjct: 279 LINVSKRLTANLKASKAF-RLGGDEFAIVAPIIPDDAQLVANANAISEELRAPYHMPEGT 337 Query: 668 LNPSASIGVAIFPDNGNDIETLLHRADIAMYQAKAVNRGRFSFFSEEMNSMAQERLALES 727 ++ SAS+G+A+FP + +E L RAD A+Y AK RG F E +E Sbjct: 338 VHVSASMGIAVFPHLASTLEQLFDRADYALYHAKKTRRGDAVLFDAEHEKQINIEARIEH 397 Query: 728 ALRDALRGGDLELNFQPQIKLHDQSLHGVEALARWHHPQLGQISPGRFIPIAEECGLIGE 787 L+ + +L + FQP + + D G EALARWH P LG + P +F IAE G++G Sbjct: 398 LLKQSDLKNELSVMFQPIVDIRDGKTAGFEALARWHSPVLGHVPPAQFFAIAERAGIVGS 457 Query: 788 LGKWALEEACFQLSDWRRRGIQVPS--ISVNLSATNFHDLDLPQFVTGLLRRYALEPSDL 845 L + L+ A S W PS +S NLSA + + + + G++ + L Sbjct: 458 LTRPLLKMALASASTWD------PSLRLSFNLSAQDLNCHEGVLSLIGIIENSCFDTRRL 511 Query: 846 TLEITETVLMDTNPSTSQTIAAVHALGIPLAMDDFGTGYSSLGYLRKLPVSELKLDQSFV 905 LEITET Q++ + LG +++DDFGTGYSSL L LP++++K+D+SFV Sbjct: 512 DLEITETAFAHDFEQVRQSVDMLRRLGCGISLDDFGTGYSSLTRLHALPLTKIKIDRSFV 571 Query: 906 RDMAKDPAVSALTNAVIRIGESLKLTVVAEGVEDAEQYALLISQGCDVAQGYLFSRPM 963 D+ + PA + +++ + ++L V EGVE + + L G + QGY+++ P+ Sbjct: 572 TDLHEKPASYKIVKSLLALSRDMELECVVEGVETSAELTTLEGLGATLVQGYIYAPPL 629 >Z2221m_3 [T] COG2200 FOG EcZ Escherichia coli O157:H7 EDL933 Length = 267 Score = 245 bits (625), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 117/258 (45%), Positives = 171/258 (66%) Query: 715 MNSMAQERLALESALRDALRGGDLELNFQPQIKLHDQSLHGVEALARWHHPQLGQISPGR 774 MN M +ERL L +AL++A+ L+L +QPQI L+G+EALARWH PQ G + P R Sbjct: 2 MNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWHDPQHGHVPPSR 61 Query: 775 FIPIAEECGLIGELGKWALEEACFQLSDWRRRGIQVPSISVNLSATNFHDLDLPQFVTGL 834 FIP+AEE G I +G+W + EAC QL++WR + I +P++SVNLSA +F LP V+ Sbjct: 62 FIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPALSVNLSALHFRSNQLPNQVSDA 121 Query: 835 LRRYALEPSDLTLEITETVLMDTNPSTSQTIAAVHALGIPLAMDDFGTGYSSLGYLRKLP 894 ++ + ++ LT+EITE+++M+ + + I + +G+ L++DDFGTG+S L L LP Sbjct: 122 MQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLP 181 Query: 895 VSELKLDQSFVRDMAKDPAVSALTNAVIRIGESLKLTVVAEGVEDAEQYALLISQGCDVA 954 V+E+K+D+SFV + + AL A+ IG+SL LTVVAEGVE EQ+ +L C V Sbjct: 182 VTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVI 241 Query: 955 QGYLFSRPMSADALENWV 972 QGY FSRP+ A+ + W+ Sbjct: 242 QGYFFSRPLPAEEIPGWM 259 >ECs2093_2 [T] COG2200 FOG Ecs Escherichia coli O157:H7 Length = 268 Score = 245 bits (625), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 117/258 (45%), Positives = 171/258 (66%) Query: 715 MNSMAQERLALESALRDALRGGDLELNFQPQIKLHDQSLHGVEALARWHHPQLGQISPGR 774 MN M +ERL L +AL++A+ L+L +QPQI L+G+EALARWH PQ G + P R Sbjct: 3 MNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWHDPQHGHVPPSR 62 Query: 775 FIPIAEECGLIGELGKWALEEACFQLSDWRRRGIQVPSISVNLSATNFHDLDLPQFVTGL 834 FIP+AEE G I +G+W + EAC QL++WR + I +P++SVNLSA +F LP V+ Sbjct: 63 FIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPALSVNLSALHFRSNQLPNQVSDA 122 Query: 835 LRRYALEPSDLTLEITETVLMDTNPSTSQTIAAVHALGIPLAMDDFGTGYSSLGYLRKLP 894 ++ + ++ LT+EITE+++M+ + + I + +G+ L++DDFGTG+S L L LP Sbjct: 123 MQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLP 182 Query: 895 VSELKLDQSFVRDMAKDPAVSALTNAVIRIGESLKLTVVAEGVEDAEQYALLISQGCDVA 954 V+E+K+D+SFV + + AL A+ IG+SL LTVVAEGVE EQ+ +L C V Sbjct: 183 VTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVI 242 Query: 955 QGYLFSRPMSADALENWV 972 QGY FSRP+ A+ + W+ Sbjct: 243 QGYFFSRPLPAEEIPGWM 260 >yddU_3 [T] COG2200 FOG Eco Escherichia coli K12 Length = 267 Score = 241 bits (616), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 116/258 (44%), Positives = 169/258 (65%) Query: 715 MNSMAQERLALESALRDALRGGDLELNFQPQIKLHDQSLHGVEALARWHHPQLGQISPGR 774 MN M +ERL L +AL++A+ L+L +QPQI L+G+EALARWH P G + P R Sbjct: 2 MNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWHDPLHGHVPPSR 61 Query: 775 FIPIAEECGLIGELGKWALEEACFQLSDWRRRGIQVPSISVNLSATNFHDLDLPQFVTGL 834 FIP+AEE G I +G+W + EAC QL++WR + I +P++SVNLSA +F LP V+ Sbjct: 62 FIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPALSVNLSALHFRSNQLPNQVSDA 121 Query: 835 LRRYALEPSDLTLEITETVLMDTNPSTSQTIAAVHALGIPLAMDDFGTGYSSLGYLRKLP 894 + + ++ LT+EITE+++M+ + + I + +G+ L++DDFGTG+S L L LP Sbjct: 122 MHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLP 181 Query: 895 VSELKLDQSFVRDMAKDPAVSALTNAVIRIGESLKLTVVAEGVEDAEQYALLISQGCDVA 954 V+E+K+D+SFV + + AL A+ IG+SL LTVVAEGVE EQ+ +L C V Sbjct: 182 VTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVI 241 Query: 955 QGYLFSRPMSADALENWV 972 QGY FSRP+ A+ + W+ Sbjct: 242 QGYFFSRPLPAEEIPGWM 259