BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0010.p         (189 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3036 [J] COG0244 Ribosomal protein L10 Rso Ralstonia solanace...   243   1e-64
NMB0130 [J] COG0244 Ribosomal protein L10 Nme Neisseria meningit...   201   6e-52
NMA0144 [J] COG0244 Ribosomal protein L10 NmA Neisseria meningit...   201   6e-52
lin0282 [J] COG0244 Ribosomal protein L10 Lin Listeria innocua        124   2e-28
BH0121 [J] COG0244 Ribosomal protein L10 Bha Bacillus halodurans      123   2e-28

>RSc3036 [J] COG0244 Ribosomal protein L10 Rso Ralstonia solanacearum
          Length = 168

 Score =  243 bits (621), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 124/163 (76%), Positives = 144/163 (88%)

Query: 25  LSLNLNDKKAVVAEVSAKVASAQTIVVAEYRGIQVGSLTQLRAQARAQGVYLRVLKNTLA 84
           ++LNL DKKAVVAEV+A+VA A TIVVAEYRGI VG LT+LRAQAR QGVYLRVLKNTLA
Sbjct: 1   MALNLEDKKAVVAEVTAQVAKASTIVVAEYRGITVGDLTKLRAQARQQGVYLRVLKNTLA 60

Query: 85  RRAIEGTKFADLAPQLTGPLIYSISEDAVAAAKVVSDFAKTNDKLVVKAGNYEGKQLDKA 144
           RRA+EGT FA+LA Q+TGPLIY ISEDAVA AKV++DFAK NDKLV++AG+YEGK LD A
Sbjct: 61  RRAVEGTPFAELAEQMTGPLIYGISEDAVAPAKVLNDFAKGNDKLVLRAGSYEGKVLDAA 120

Query: 145 AVASLANIPSREVLLAQVLGMMQAPVSGFARALAALAAKKDAE 187
            V +LA+IPSRE LL+++L +MQAPVSGFARALAALA KK +E
Sbjct: 121 GVKALASIPSREELLSKLLFVMQAPVSGFARALAALAEKKQSE 163


>NMB0130 [J] COG0244 Ribosomal protein L10 Nme Neisseria meningitidis MC58
          Length = 166

 Score =  201 bits (512), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 109/165 (66%), Positives = 136/165 (82%)

Query: 25  LSLNLNDKKAVVAEVSAKVASAQTIVVAEYRGIQVGSLTQLRAQARAQGVYLRVLKNTLA 84
           +SLN+  KK  V E+SA +A+AQT+VVAEYRGI V S+T+LRA AR +GVYLRVLKNTLA
Sbjct: 1   MSLNIETKKVAVEEISAAIANAQTLVVAEYRGISVSSMTELRANARKEGVYLRVLKNTLA 60

Query: 85  RRAIEGTKFADLAPQLTGPLIYSISEDAVAAAKVVSDFAKTNDKLVVKAGNYEGKQLDKA 144
           RRA++GT FA+LA Q+ GPL+Y+ SEDAVAAAKV+  FAK +DK+VVKAG+Y G+ ++ A
Sbjct: 61  RRAVQGTSFAELADQMVGPLVYAASEDAVAAAKVLHQFAKKDDKIVVKAGSYNGEVMNAA 120

Query: 145 AVASLANIPSREVLLAQVLGMMQAPVSGFARALAALAAKKDAEAA 189
            VA LA+IPSRE LL+++L +MQAPVSGFAR LAALA KK  E A
Sbjct: 121 QVAELASIPSREELLSKLLFVMQAPVSGFARGLAALAEKKAGEEA 165


>NMA0144 [J] COG0244 Ribosomal protein L10 NmA Neisseria meningitidis Z2491
          Length = 166

 Score =  201 bits (512), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 109/165 (66%), Positives = 136/165 (82%)

Query: 25  LSLNLNDKKAVVAEVSAKVASAQTIVVAEYRGIQVGSLTQLRAQARAQGVYLRVLKNTLA 84
           +SLN+  KK  V E+SA +A+AQT+VVAEYRGI V S+T+LRA AR +GVYLRVLKNTLA
Sbjct: 1   MSLNIETKKVAVEEISAAIANAQTLVVAEYRGISVSSMTELRANARKEGVYLRVLKNTLA 60

Query: 85  RRAIEGTKFADLAPQLTGPLIYSISEDAVAAAKVVSDFAKTNDKLVVKAGNYEGKQLDKA 144
           RRA++GT FA+LA Q+ GPL+Y+ SEDAVAAAKV+  FAK +DK+VVKAG+Y G+ ++ A
Sbjct: 61  RRAVQGTSFAELADQMVGPLVYAASEDAVAAAKVLHQFAKKDDKIVVKAGSYNGEVMNAA 120

Query: 145 AVASLANIPSREVLLAQVLGMMQAPVSGFARALAALAAKKDAEAA 189
            VA LA+IPSRE LL+++L +MQAPVSGFAR LAALA KK  E A
Sbjct: 121 QVAELASIPSREELLSKLLFVMQAPVSGFARGLAALAEKKAGEEA 165


>lin0282 [J] COG0244 Ribosomal protein L10 Lin Listeria innocua
          Length = 166

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 102/162 (62%), Gaps = 1/162 (0%)

Query: 29  LNDKKAVVAEVSAKVASAQTIVVAEYRGIQVGSLTQLRAQARAQGVYLRVLKNTLARRAI 88
           L  K++ V E+  K++++ + V+ +YRG+ VG +T LR Q R  G+  +V KN+L RRA+
Sbjct: 5   LEAKQSAVEEIKTKLSASASTVIVDYRGLNVGEITDLRKQLRDAGIEFKVYKNSLTRRAV 64

Query: 89  EGTKFADLAPQLTGPLIYSIS-EDAVAAAKVVSDFAKTNDKLVVKAGNYEGKQLDKAAVA 147
           E   +  L   LTGP   + S ED VA AK+++DFAK ++ L +KAG  EGK      + 
Sbjct: 65  EANGYEGLEGALTGPNAIAFSNEDVVAPAKILNDFAKDHEALEIKAGVIEGKVASLEEIK 124

Query: 148 SLANIPSREVLLAQVLGMMQAPVSGFARALAALAAKKDAEAA 189
           +LA +PSRE LL+ +  ++QAPV G A A  A+A +K+ + A
Sbjct: 125 ALATLPSREGLLSMLCNVLQAPVRGLAIATKAVADQKEGQEA 166


>BH0121 [J] COG0244 Ribosomal protein L10 Bha Bacillus halodurans
          Length = 165

 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 100/162 (61%), Gaps = 1/162 (0%)

Query: 29  LNDKKAVVAEVSAKVASAQTIVVAEYRGIQVGSLTQLRAQARAQGVYLRVLKNTLARRAI 88
           L  KK +V E++ K+  +Q+ VV +YRG+ V  +T+LR Q R  G   +V KNT+ RRA 
Sbjct: 4   LEQKKQIVTEIATKLKESQSTVVVDYRGLNVAEVTELRKQLREAGCEFKVYKNTMTRRAA 63

Query: 89  EGTKFADLAPQLTGPL-IYSISEDAVAAAKVVSDFAKTNDKLVVKAGNYEGKQLDKAAVA 147
           E  +  +L   L GP  I   +EDA+A AK+++ FAK ++ L +KAG  EG       V 
Sbjct: 64  EVAELTELNDVLVGPTAIAFHNEDAIAPAKIINSFAKEHEALEIKAGVIEGNVASVEEVK 123

Query: 148 SLANIPSREVLLAQVLGMMQAPVSGFARALAALAAKKDAEAA 189
           +LA +PSRE LL+ +L ++QAPV  FA A  A+A +K+ + A
Sbjct: 124 ALAELPSREGLLSMLLSVLQAPVRNFALATKAVADQKEEQGA 165