BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0009.p         (126 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMB0131 [J] COG0222 Ribosomal protein L7/L12 Nme Neisseria menin...   145   3e-35
NMA0143 [J] COG0222 Ribosomal protein L7/L12 NmA Neisseria menin...   145   3e-35
VC0327 [J] COG0222 Ribosomal protein L7/L12 Vch Vibrio cholerae       134   7e-32
RSc3035 [J] COG0222 Ribosomal protein L7/L12 Rso Ralstonia solan...   133   9e-32
jhp1122 [J] COG0222 Ribosomal protein L7/L12 jHp Helicobacter py...   132   1e-31

>NMB0131 [J] COG0222 Ribosomal protein L7/L12 Nme Neisseria meningitidis
           MC58
          Length = 123

 Score =  145 bits (365), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/126 (73%), Positives = 105/126 (83%), Gaps = 3/126 (2%)

Query: 1   MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAAMAAPAAGGAAGGGAAAAEEQTEF 60
           MAI+KEDILEAVG+L+VMELNDLVKAFEEKFGVSAAA+A     GA    AA AEE+TEF
Sbjct: 1   MAITKEDILEAVGSLTVMELNDLVKAFEEKFGVSAAAVAVAGPAGAG---AADAEEKTEF 57

Query: 61  TVVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAG 120
            VVLA  G  KVGVIK VR ITGLGLKEAKD+VDGAPK +KEG++KA+AE  +K+LEEAG
Sbjct: 58  DVVLASAGDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGVSKAEAEDIQKQLEEAG 117

Query: 121 AKAELK 126
           AK E+K
Sbjct: 118 AKVEIK 123


>NMA0143 [J] COG0222 Ribosomal protein L7/L12 NmA Neisseria meningitidis
           Z2491
          Length = 123

 Score =  145 bits (365), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/126 (73%), Positives = 105/126 (83%), Gaps = 3/126 (2%)

Query: 1   MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAAMAAPAAGGAAGGGAAAAEEQTEF 60
           MAI+KEDILEAVG+L+VMELNDLVKAFEEKFGVSAAA+A     GA    AA AEE+TEF
Sbjct: 1   MAITKEDILEAVGSLTVMELNDLVKAFEEKFGVSAAAVAVAGPAGAG---AADAEEKTEF 57

Query: 61  TVVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAG 120
            VVLA  G  KVGVIK VR ITGLGLKEAKD+VDGAPK +KEG++KA+AE  +K+LEEAG
Sbjct: 58  DVVLASAGDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGVSKAEAEDIQKQLEEAG 117

Query: 121 AKAELK 126
           AK E+K
Sbjct: 118 AKVEIK 123


>VC0327 [J] COG0222 Ribosomal protein L7/L12 Vch Vibrio cholerae
          Length = 121

 Score =  134 bits (336), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 79/128 (61%), Positives = 96/128 (75%), Gaps = 9/128 (7%)

Query: 1   MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAA--MAAPAAGGAAGGGAAAAEEQT 58
           M+I+ E IL+A+  +SVM++ +L+ A EEKFGVSAAA  ++ PAA       AAA EEQT
Sbjct: 1   MSITNEQILDAIAEMSVMQVVELISAMEEKFGVSAAAAVVSGPAA-------AAAVEEQT 53

Query: 59  EFTVVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEE 118
           EF V+LA  GANKV VIKAVR  TGLGLKEAK LVDGAP  VKE ++K +AEA KK+LEE
Sbjct: 54  EFNVILAAAGANKVAVIKAVRGATGLGLKEAKALVDGAPASVKEAVSKEEAEALKKELEE 113

Query: 119 AGAKAELK 126
           AGA  E+K
Sbjct: 114 AGATVEVK 121


>RSc3035 [J] COG0222 Ribosomal protein L7/L12 Rso Ralstonia solanacearum
          Length = 124

 Score =  133 bits (335), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 94/126 (74%), Positives = 105/126 (83%), Gaps = 2/126 (1%)

Query: 1   MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAAMAAPAAGGAAGGGAAAAEEQTEF 60
           MAI+K+DILEAV A+SVMELNDLVKAFE+KFGVSAAA+A     G A   A AAEE+TEF
Sbjct: 1   MAITKDDILEAVSAMSVMELNDLVKAFEDKFGVSAAAVAVAGPAGGAA--APAAEEKTEF 58

Query: 61  TVVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAG 120
            V+L   GANKVGVIKAVREITGLGLKEAKDLVDGAPK VKE + KADA+AA KKL EAG
Sbjct: 59  DVILKGAGANKVGVIKAVREITGLGLKEAKDLVDGAPKTVKEAMPKADADAAAKKLIEAG 118

Query: 121 AKAELK 126
           A+ E+K
Sbjct: 119 AEVEVK 124


>jhp1122 [J] COG0222 Ribosomal protein L7/L12 jHp Helicobacter pylori J99
          Length = 125

 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/126 (61%), Positives = 95/126 (75%), Gaps = 1/126 (0%)

Query: 1   MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAAMAAPAAGGAAGGGAAAAEEQTEF 60
           MAISKE++LE +G+LSV+EL++LVK FEEKFGVSA      A    AGG AA +EE+TEF
Sbjct: 1   MAISKEEVLEYIGSLSVLELSELVKMFEEKFGVSATPTVV-AGAAVAGGAAAESEEKTEF 59

Query: 61  TVVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAG 120
            V+LA+ GA K+ VIK VREITGLGLKEAKD  +  P  +KEG+ K +AE  KKKLEE G
Sbjct: 60  NVILADSGAEKIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVG 119

Query: 121 AKAELK 126
           AK E+K
Sbjct: 120 AKVEVK 125