BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0008.p (1421 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3034 [K] COG0085 DNA-directed RNA polymerase, beta subunit/14... 2357 0.0 NMB0132 [K] COG0085 DNA-directed RNA polymerase, beta subunit/14... 2094 0.0 NMA0142 [K] COG0085 DNA-directed RNA polymerase, beta subunit/14... 2093 0.0 PA4270 [K] COG0085 DNA-directed RNA polymerase, beta subunit/140... 1868 0.0 XF2633 [K] COG0085 DNA-directed RNA polymerase, beta subunit/140... 1817 0.0 >RSc3034 [K] COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit Rso Ralstonia solanacearum Length = 1368 Score = 2357 bits (6108), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1133/1341 (84%), Positives = 1234/1341 (92%), Gaps = 4/1341 (0%) Query: 1 MHYSFTEKKRIRKSFAKRANVHNVPFLLATQIESYQNFLQPERAASERKNEGLQSAFTSI 60 M YSFTEKKRIRKSFAKRA VH VPFLLATQI+SY FLQ + ++RK+EGLQ+AF +I Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIQSYAQFLQEHASVAQRKSEGLQAAFNAI 60 Query: 61 FPIVSHNGFARLEFLSYVLGAPPFDVKECQQRGLTFASPLRAKVRLVILDKESPTKPVVK 120 FPIVSHNG AR+EF+SY L PPFDVKECQQRGLTF S LRAKVRL+I D+E+PTK VK Sbjct: 61 FPIVSHNGLARMEFVSYHLSNPPFDVKECQQRGLTFHSALRAKVRLIINDRENPTK--VK 118 Query: 121 EMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR 180 E+KEQEVYMGE+PLMT+TGSFVINGTERVIVSQLHRSPGVFFEHD+GKTHSSGKLLFSAR Sbjct: 119 EIKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR 178 Query: 181 IIPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILLKAIGMTSEQILANFFVFDNFNLHAE 240 IIPYRGSWLDFEFDPKDIL+FRVDRRRKMPVTILLK+IG+T EQILA+FFVFDNF L ++ Sbjct: 179 IIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKSD 238 Query: 241 GADMEFVSERLRGEVARFDITDKSGKVMVAKDKRINAKHVRDIEAAGIKHISVPEDYLLG 300 GA MEFV ERLRGEVARFDI+DK+GKV+V KDKRINAKH+RD++AAG K ISVPEDYLLG Sbjct: 239 GALMEFVPERLRGEVARFDISDKNGKVVVEKDKRINAKHIRDLDAAGTKLISVPEDYLLG 298 Query: 301 RVLAKNIVDPETGEVVASANDELTEELLAKLREANISAIQTLYTNDLDQGGYISQTLRTD 360 RVLAKNIVDP+TGEV+A+ANDELTE +L KLR+A + IQTLYTNDLDQG Y+SQTLRTD Sbjct: 299 RVLAKNIVDPDTGEVLANANDELTEGVLEKLRDAGVKEIQTLYTNDLDQGPYMSQTLRTD 358 Query: 361 DTADQTAARVAIYRMMRPGEPPTEESVEALFNGLFYSEDRYDLSAVGRMKFNRRVGRDEL 420 DT DQTAAR+AIYRMMRPGEPPTE++VEALF LFYSED YDLS VGRMK N R+ R E Sbjct: 359 DTVDQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYSEDSYDLSRVGRMKVNSRLNRSEG 418 Query: 421 TGTMTLSNDDILAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA 480 TG M L++DDIL IK+LV LRNG+GEVDDIDHLGNRRVRCVGELAENQFRAGL RVERA Sbjct: 419 TGPMVLTDDDILDTIKLLVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRVERA 478 Query: 481 VKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG 540 VKERLGQAE +NLMPHDLINSKPIS+AIREFFGSSQLSQFMDQTNPLSE+THKRR+SALG Sbjct: 479 VKERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEVTHKRRISALG 538 Query: 541 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKV 600 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYA+LN+YGFLETPYRKV Sbjct: 539 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNDYGFLETPYRKV 598 Query: 601 EGSKVTNQIDYLSAIEEGRYVIAQANATIDGEGKLSDELVSAREAGE--TILVSPERVQY 658 E SK+T+Q+DYLSAIEEG+YV+AQANAT+D +G L DELVSARE E T +V+P+RVQY Sbjct: 599 ENSKLTDQVDYLSAIEEGKYVVAQANATVDKDGNLVDELVSAREGSERETRMVTPDRVQY 658 Query: 659 MDVAPGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDS 718 +DVAP Q+VS AASL+PFLEHDDANRALMGANMQRQAVPCLR +KPLVGTG+ERTVAVDS Sbjct: 659 IDVAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRADKPLVGTGVERTVAVDS 718 Query: 719 GTTVQALRGGVVDYVDAGRVVIRVNDDEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIVK 778 GT VQA RGG+VDYVDA RVVIRVNDDEA AGEVGVDIYNLIKYTRSNQNTNINQRP+VK Sbjct: 719 GTAVQATRGGLVDYVDANRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPMVK 778 Query: 779 IGDRVAKHDVIADGASTDMGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIH 838 +GD VA+ DVIADGASTD+GELALGQNMLVAFMPWNGYNFEDSILISE+VVA+DRYTSIH Sbjct: 779 VGDIVARGDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYTSIH 838 Query: 839 IEELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEVEAGDTLVGKVTPKGE 898 IEELSVVARDTKLG EEITRDISNLAE QLARLDESGI YIGAEVEAGD +VGKVTPKGE Sbjct: 839 IEELSVVARDTKLGPEEITRDISNLAEAQLARLDESGITYIGAEVEAGDVMVGKVTPKGE 898 Query: 899 TQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIQRDKRAQQIIDDE 958 TQLTPEEKLLRAIFGEKASDVKDTSLRVPSGM GTVIDVQVFTREG+ RDKRAQ IID+E Sbjct: 899 TQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGVTRDKRAQSIIDEE 958 Query: 959 LKRYRLDLNDQLRIVEGDAFQRLERLLIGKVANGGPKKLVKGTKLDKAYLDDLDKFHWFD 1018 LKRYRLDLNDQLRIVEGDAFQRLERLL+GKV NGGPKKL KGT L K YL DLDK+HWFD Sbjct: 959 LKRYRLDLNDQLRIVEGDAFQRLERLLVGKVVNGGPKKLAKGTALTKEYLADLDKWHWFD 1018 Query: 1019 IRPADDDIANALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELPPGVQKMVKVYLAVKRR 1078 IRP+DDD+A LEA+KE+I +KRH FDLAFEEKRKKLTQGDELPPGV KMVKVYLAVKRR Sbjct: 1019 IRPSDDDVATQLEAVKEAIEQKRHDFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAVKRR 1078 Query: 1079 LQPGDKMAGRHGNKGVVSRILPIEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGW 1138 LQPGDKMAGRHGNKGVVS+I PIEDMP+MADGTPADIVLNPLGVPSRMNVGQ+LE HLGW Sbjct: 1079 LQPGDKMAGRHGNKGVVSKITPIEDMPYMADGTPADIVLNPLGVPSRMNVGQILETHLGW 1138 Query: 1139 AAKGLGLRLGEMVQAQAKVAELRKFLTTIYNESGKQEELDSFTDEEIIELVENLKKGVPF 1198 AA+GLG R+G M++AQAK AE+RK L IYNESGK E+LDS +D E++EL ENLKKGVPF Sbjct: 1139 AARGLGERIGNMLKAQAKAAEMRKLLGQIYNESGKVEDLDSLSDAEVLELAENLKKGVPF 1198 Query: 1199 ATPVFDGAHEEETRRMLDLAYPDPIAKQLGMTPSKNQVTMYDGRTGEAFERTVTVGYMHY 1258 ATPVFDGAHE+E RRMLDLAYP+ IAK+ G+T SK QVT++DGRTGEAFER VT+G MH Sbjct: 1199 ATPVFDGAHEDEIRRMLDLAYPEDIAKEKGLTASKQQVTLFDGRTGEAFERPVTLGVMHM 1258 Query: 1259 LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLT 1318 LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLT Sbjct: 1259 LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLT 1318 Query: 1319 VKSDDVNGRTKVYENLVKGRH 1339 VKSDDVNGRTKVYEN+VKG H Sbjct: 1319 VKSDDVNGRTKVYENIVKGEH 1339 >NMB0132 [K] COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit Nme Neisseria meningitidis MC58 Length = 1394 Score = 2094 bits (5425), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1017/1364 (74%), Positives = 1156/1364 (84%), Gaps = 26/1364 (1%) Query: 1 MHYSFTEKKRIRKSFAKRANVHNVPFLLATQIESYQNFLQPERAASERKNEGLQSAFTSI 60 M+YSFTEKKRIRKSFAKR NV VPFLLATQI+SY FLQ E A +R ++GLQ+AF SI Sbjct: 3 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 62 Query: 61 FPIVSHNGFARLEFLSYVLGAPPFDVKECQQRGLTFASPLRAKVRLVILDKESPTKPVVK 120 FPIVSHNG+ARLEF+ Y LG P FD+ ECQ RG+T+A+PLRA++RLVILDKE+ +KP VK Sbjct: 63 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDKEA-SKPTVK 121 Query: 121 EMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR 180 E++E EVYMGE+PLMT +GSFVINGTERVIVSQLHRSPGVFFEHD+GKTHSSGKLLFSAR Sbjct: 122 EVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR 181 Query: 181 IIPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILLKAIGMTSEQILANFFVFDNFNLHAE 240 IIPYRGSWLDFEFDPKD+L+FR+DRRRKMPVTILLKA+G +EQIL F+ + F L + Sbjct: 182 IIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSSN 241 Query: 241 GADMEFVSERLRGEVARFDITDKSGKVMVAKDKRINAKHVRDIEAAGIKHISVPEDYLLG 300 G + V++RL+GE A+ DI DK G V+VAK KRI AK++RDI AG+ + V + LLG Sbjct: 242 GVQTDLVADRLKGETAKVDILDKEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPESLLG 301 Query: 301 RVLAKNIVDPETGEVVASANDELTEELLAKLREANISAIQTLYTNDLDQGGYISQTLRTD 360 + LA +++D ETGEV+ASANDE+TEELLAK + I TLY N+LDQG YIS TLRTD Sbjct: 302 KALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTLRTD 361 Query: 361 DTADQTAARVAIYRMMRPGEPPTEESVEALFNGLFYSEDRYDLSAVGRMKFNRRVGRDEL 420 +TA + AARVAIYRMMRPGEPPTEE+VE LFN LF+SED YDLS VGRMKFN R +L Sbjct: 362 ETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYEQKL 421 Query: 421 T----------------------GTMTLSNDDILAVIKILVELRNGRGEVDDIDHLGNRR 458 + G LS +DI+A I LVELRNG GEVDDIDHLGNRR Sbjct: 422 SEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLGNRR 481 Query: 459 VRCVGELAENQFRAGLVRVERAVKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLS 518 VR VGEL ENQFR+GL RVERAVKERL QAE++NLMPHDLIN+KP+SAAI+EFFGSSQLS Sbjct: 482 VRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSSQLS 541 Query: 519 QFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 578 QFMDQTNPLSE+THKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI Sbjct: 542 QFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 601 Query: 579 NSLALYARLNEYGFLETPYRKVEGSKVTNQIDYLSAIEEGRYVIAQANATIDGEGKLSDE 638 NSL++YAR N+YGFLETPYR+V KVT +IDYLSAIEEGRYVIAQANA +D +G L + Sbjct: 602 NSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNLIGD 661 Query: 639 LVSAREAGETILVSPERVQYMDVAPGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPC 698 LV+ RE GETI+ +P+RVQYMDVA GQVVSVAASLIPFLEHDDANRALMGANMQRQAVPC Sbjct: 662 LVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPC 721 Query: 699 LRPEKPLVGTGIERTVAVDSGTTVQALRGGVVDYVDAGRVVIRVNDDEAQAGEVGVDIYN 758 LRPEKP+VGTGIER+VAVDS T + A RGGVV+YVDA RVVIRV+DDEA AGEVGVDIYN Sbjct: 722 LRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVDIYN 781 Query: 759 LIKYTRSNQNTNINQRPIVKIGDRVAKHDVIADGASTDMGELALGQNMLVAFMPWNGYNF 818 L+K+TRSNQ+TNINQRP VK GD + + D++ADGASTD GELALGQNM +AFMPWNGYN+ Sbjct: 782 LVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDFGELALGQNMTIAFMPWNGYNY 841 Query: 819 EDSILISEKVVADDRYTSIHIEELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVY 878 EDSILISEKV ADDRYTSIHIEEL+VVARDTKLGAE+ITRDI NL+E RLDESGIVY Sbjct: 842 EDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVY 901 Query: 879 IGAEVEAGDTLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQ 938 IGAEVEAGD LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLR+P+GM GTVIDVQ Sbjct: 902 IGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQ 961 Query: 939 VFTREGIQRDKRAQQIIDDELKRYRLDLNDQLRIVEGDAFQRLERLLIGKVANGGPKKLV 998 VFTREGIQRDKRAQ IID ELKRYRLDLNDQLRI + DAF R+ER+++G+ ANGGP KL Sbjct: 962 VFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPMKLA 1021 Query: 999 KGTKLDKAYLDDLDKFH-WFDIRPADDDIANALEAIKESIAEKRHQFDLAFEEKRKKLTQ 1057 KG+++ YL L H WFDIR D+D+A LE IK S+ +KR + D +E K+KKLTQ Sbjct: 1022 KGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKKLTQ 1081 Query: 1058 GDELPPGVQKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSRILPIEDMPHMADGTPADIVL 1117 GDEL PGVQKMVKV++A+KRRLQ GDKMAGRHGNKGVVSRILP+EDMP+MADG P DIVL Sbjct: 1082 GDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVL 1141 Query: 1118 NPLGVPSRMNVGQVLEVHLGWAAKGLGLRLGEMVQAQAKVAELRKFLTTIYNESGKQEEL 1177 NPLGVPSRMN+GQ+LEVHLGWAAKG+G R+ M++ Q K ELR+FL +YN SGK+E+L Sbjct: 1142 NPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGELREFLNRLYNGSGKKEDL 1201 Query: 1178 DSFTDEEIIELVENLKKGVPFATPVFDGAHEEETRRMLDLAYP--DPIAKQLGMTPSKNQ 1235 D+ TDEEIIEL NL+KG FA+PVFDGA E E R ML+LAYP DP ++LG SK Q Sbjct: 1202 DALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGFNDSKTQ 1261 Query: 1236 VTMYDGRTGEAFERTVTVGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQR 1295 +T+YDGR+GEAF+R VTVG MHYLKLHHLVD+KMHARSTGPYSLVTQQPLGGKAQFGGQR Sbjct: 1262 ITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQR 1321 Query: 1296 FGEMEVWALEAYGASYVLQEMLTVKSDDVNGRTKVYENLVKGRH 1339 FGEMEVWALEAYGA+Y LQEMLTVKSDDVNGRTK+YEN+VKG H Sbjct: 1322 FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEH 1365 >NMA0142 [K] COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit NmA Neisseria meningitidis Z2491 Length = 1392 Score = 2093 bits (5422), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1016/1364 (74%), Positives = 1155/1364 (84%), Gaps = 26/1364 (1%) Query: 1 MHYSFTEKKRIRKSFAKRANVHNVPFLLATQIESYQNFLQPERAASERKNEGLQSAFTSI 60 M YSFTEKKRIRKSFAKR NV VPFLLATQI+SY FLQ E A +R ++GLQ+AF SI Sbjct: 1 MSYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 61 FPIVSHNGFARLEFLSYVLGAPPFDVKECQQRGLTFASPLRAKVRLVILDKESPTKPVVK 120 FPIVSHNG+ARLEF+ Y LG P FD+ ECQ RG+T+A+PLRA++RLVILDKE+ +KP VK Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDKEA-SKPTVK 119 Query: 121 EMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR 180 E++E EVYMGE+PLMT +GSFVINGTERVIVSQLHRSPGVFFEHD+GKTHSSGKLLFSAR Sbjct: 120 EVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR 179 Query: 181 IIPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILLKAIGMTSEQILANFFVFDNFNLHAE 240 IIPYRGSWLDFEFDPKD+L+FR+DRRRKMPVTILLKA+G +EQIL F+ + F L + Sbjct: 180 IIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSSN 239 Query: 241 GADMEFVSERLRGEVARFDITDKSGKVMVAKDKRINAKHVRDIEAAGIKHISVPEDYLLG 300 G + V+ RL+GE A+ DI DK G V+VAK KRI AK++RDI AG+ + V + LLG Sbjct: 240 GVQTDLVAGRLKGETAKVDILDKEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPESLLG 299 Query: 301 RVLAKNIVDPETGEVVASANDELTEELLAKLREANISAIQTLYTNDLDQGGYISQTLRTD 360 + LA +++D ETGEV+ASANDE+TEELLAK + I TLY N+LDQG YIS TLRTD Sbjct: 300 KALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTLRTD 359 Query: 361 DTADQTAARVAIYRMMRPGEPPTEESVEALFNGLFYSEDRYDLSAVGRMKFNRRVGRDEL 420 +TA + AARVAIYRMMRPGEPPTEE+VE LFN LF+SED YDLS VGRMKFN R +L Sbjct: 360 ETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYEQKL 419 Query: 421 T----------------------GTMTLSNDDILAVIKILVELRNGRGEVDDIDHLGNRR 458 + G LS +DI+A I LVELRNG GEVDDIDHLGNRR Sbjct: 420 SEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLGNRR 479 Query: 459 VRCVGELAENQFRAGLVRVERAVKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLS 518 VR VGEL ENQFR+GL RVERAVKERL QAE++NLMPHDLIN+KP+SAAI+EFFGSSQLS Sbjct: 480 VRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSSQLS 539 Query: 519 QFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 578 QFMDQTNPLSE+THKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI Sbjct: 540 QFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 599 Query: 579 NSLALYARLNEYGFLETPYRKVEGSKVTNQIDYLSAIEEGRYVIAQANATIDGEGKLSDE 638 NSL++YAR N+YGFLETPYR+V KVT +IDYLSAIEEGRYVIAQANA +D +G L + Sbjct: 600 NSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNLIGD 659 Query: 639 LVSAREAGETILVSPERVQYMDVAPGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPC 698 LV+ RE GETI+ +P+RVQYMDVA GQVVSVAASLIPFLEHDDANRALMGANMQRQAVPC Sbjct: 660 LVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPC 719 Query: 699 LRPEKPLVGTGIERTVAVDSGTTVQALRGGVVDYVDAGRVVIRVNDDEAQAGEVGVDIYN 758 LRPEKP+VGTGIER+VAVDS T + A RGGVV+YVDA RVV+RV+DDEA AGEVGVDIYN Sbjct: 720 LRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVVRVHDDEATAGEVGVDIYN 779 Query: 759 LIKYTRSNQNTNINQRPIVKIGDRVAKHDVIADGASTDMGELALGQNMLVAFMPWNGYNF 818 L+K+TRSNQ+TNINQRP VK GD + + D++ADGASTD+GELALGQNM +AFMPWNGYN+ Sbjct: 780 LVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNGYNY 839 Query: 819 EDSILISEKVVADDRYTSIHIEELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVY 878 EDSILISEKV ADDRYTSIHIEEL+VVARDTKLGAE+ITRDI NL+E RLDESGIVY Sbjct: 840 EDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVY 899 Query: 879 IGAEVEAGDTLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQ 938 IGAEVEAGD LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLR+P+GM GTVIDVQ Sbjct: 900 IGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQ 959 Query: 939 VFTREGIQRDKRAQQIIDDELKRYRLDLNDQLRIVEGDAFQRLERLLIGKVANGGPKKLV 998 VFTREGIQRDKRAQ IID ELKRYRLDLNDQLRI + DAF R+ER+++G+ ANGGP KL Sbjct: 960 VFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPMKLA 1019 Query: 999 KGTKLDKAYLDDLDKFH-WFDIRPADDDIANALEAIKESIAEKRHQFDLAFEEKRKKLTQ 1057 KG+++ YL L H WFDIR D+D+A LE IK S+ +KR + D +E K+KKLTQ Sbjct: 1020 KGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKKLTQ 1079 Query: 1058 GDELPPGVQKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSRILPIEDMPHMADGTPADIVL 1117 GDEL PGVQKMVKV++A+KRRLQ GDKMAGRHGNKGVVSRILP+EDMP+MADG P DIVL Sbjct: 1080 GDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVL 1139 Query: 1118 NPLGVPSRMNVGQVLEVHLGWAAKGLGLRLGEMVQAQAKVAELRKFLTTIYNESGKQEEL 1177 NPLGVPSRMN+GQ+LEVHLGWAAKG+G R+ M++ Q K ELR+FL +YN SGK+E+L Sbjct: 1140 NPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGELREFLNRLYNGSGKKEDL 1199 Query: 1178 DSFTDEEIIELVENLKKGVPFATPVFDGAHEEETRRMLDLAYP--DPIAKQLGMTPSKNQ 1235 D+ TDEEIIEL NL+KG FA+PVFDGA E E R ML+LAYP DP ++LG SK Q Sbjct: 1200 DALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGFNDSKTQ 1259 Query: 1236 VTMYDGRTGEAFERTVTVGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQR 1295 +T+YDGR+GEAF+R VTVG MHYLKLHHLVD+KMHARSTGPYSLVTQQPLGGKAQFGGQR Sbjct: 1260 ITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQR 1319 Query: 1296 FGEMEVWALEAYGASYVLQEMLTVKSDDVNGRTKVYENLVKGRH 1339 FGEMEVWALEAYGA+Y LQEMLTVKSDDVNGRTK+YEN+VKG H Sbjct: 1320 FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEH 1363 >PA4270 [K] COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit Pae Pseudomonas aeruginosa Length = 1357 Score = 1868 bits (4838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 906/1340 (67%), Positives = 1083/1340 (80%), Gaps = 13/1340 (0%) Query: 1 MHYSFTEKKRIRKSFAKRANVHNVPFLLATQIESYQNFLQPERAASERKNEGLQSAFTSI 60 M YS+TEKKRIRK F+K +V +VP+LLA Q++SY+ FLQ + ++ GL +AF S+ Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKEQFRDVGLHAAFKSV 60 Query: 61 FPIVSHNGFARLEFLSYVLGAPPFDVKECQQRGLTFASPLRAKVRLVILDKESPTKPVVK 120 FPI+S++G A LE++ Y LG P FDVKEC RG+TFA PLR KVRL+I D+ES K +K Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDRESSNK-AIK 119 Query: 121 EMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR 180 ++KEQEVYMGE+PLMT G+F+INGTERVIVSQLHRSPGVFF+HDRGKTHSSGKLL+SAR Sbjct: 120 DIKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 179 Query: 181 IIPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILLKAIGMTSEQILANFFVFDNFNLHAE 240 IIPYRGSWLDFEFDPKD +F R+DRRRK+P ++LL+A+G ++E+IL F+ + F++ E Sbjct: 180 IIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEILNAFYATNVFHIKGE 239 Query: 241 GADMEFVSERLRGEVARFDITDKSGKVMVAKDKRINAKHVRDIEAAGIKHISVPEDYLLG 300 ++E V +RLRGEVA DI D SGKV+V + +RI A+H+ +E AG+ + VP DYL+G Sbjct: 240 TLNLELVPQRLRGEVASIDIKDGSGKVIVEQGRRITARHINQLEKAGVSQLEVPFDYLIG 299 Query: 301 RVLAKNIVDPETGEVVASANDELTEELLAKLREANISAIQTLYTNDLDQGGYISQTLRTD 360 R +AK IV P TGE++A N ELT +LLAK+ +A + I+TLYTND+D G +IS TL+ D Sbjct: 300 RTIAKAIVHPATGEIIAECNTELTLDLLAKVAKAQVVRIETLYTNDIDCGPFISDTLKID 359 Query: 361 DTADQTAARVAIYRMMRPGEPPTEESVEALFNGLFYSEDRYDLSAVGRMKFNRRVGRDEL 420 +T++Q A V IYRMMRPGEPPT+E+ E LF LF+S +RYDLSAVGRMKFNRR+GR E+ Sbjct: 360 NTSNQLEALVEIYRMMRPGEPPTKEAAETLFGNLFFSAERYDLSAVGRMKFNRRIGRTEI 419 Query: 421 TGTMTLSNDDILAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA 480 G LS +DI+ V+K LV++RNG+G VDDIDHLGNRRVRCVGE+AENQFR GLVRVERA Sbjct: 420 EGPGVLSKEDIIDVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERA 479 Query: 481 VKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG 540 VKERL AE++ LMP DLIN+KP++AAI+EFFGSSQLSQFMDQ NPLSEITHKRRVSALG Sbjct: 480 VKERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALG 539 Query: 541 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKV 600 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLA YAR N+YGFLE+PYR V Sbjct: 540 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVV 599 Query: 601 EGSKVTNQIDYLSAIEEGRYVIAQANATIDGEGKLSDELVSAREAGETILVSPERVQYMD 660 + S VT++I +LSAIEE +VIAQA+AT++ +G+L DELV+ R E + +PE V MD Sbjct: 600 KDSLVTDEIVFLSAIEEADHVIAQASATLNEKGQLVDELVAVRHLNEFTVKAPEDVTLMD 659 Query: 661 VAPGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDSGT 720 V+P QVVSVAASLIPFLEHDDANRALMG+NMQRQAVP LR +KPLVGTG+ER VA DSG Sbjct: 660 VSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGV 719 Query: 721 TVQALRGGVVDYVDAGRVVIRVNDDEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIVKIG 780 V A RGGV+D VDA RVV+RV DDE + GE GVDIYNL KYTRSNQNT INQRP+V G Sbjct: 720 CVVARRGGVIDSVDASRVVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKG 779 Query: 781 DRVAKHDVIADGASTDMGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE 840 D VA+ D++ADG STDMGELALGQNM VAFMPWNG+NFEDSI +SE+VV +DR+T+IHI+ Sbjct: 780 DVVARGDILADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQ 839 Query: 841 ELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEVEAGDTLVGKVTPKGETQ 900 EL+ VARDTKLG EEIT DI N+ E L +LDE+GIVY+GAEV+AGD LVGKVTPKGETQ Sbjct: 840 ELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKGETQ 899 Query: 901 LTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIQRDKRAQQIIDDELK 960 LTPEEKLLRAIFGEKASDVKDTSLRVP+G GTVIDVQVFTR+G++RD RA I +L Sbjct: 900 LTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKMQLD 959 Query: 961 RYRLDLNDQLRIVEGDAFQRLERLLIGKVANGGPKKLVKGTKLDKAYLDDLDKFHWFDIR 1020 + R DLN++ RIVEG F+RL L+G A GGP L KGT++ YLD L++ WF +R Sbjct: 960 QIRKDLNEEFRIVEGATFERLRAALVGAKAEGGP-ALKKGTEITDDYLDGLERGQWFKLR 1018 Query: 1021 PADDDIANALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELPPGVQKMVKVYLAVKRRLQ 1080 ADD + LE + I+++R D FE+K++KL QGD+L PGV K+VKVYLA+KRR+Q Sbjct: 1019 MADDALNEQLEKAQAYISDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQ 1078 Query: 1081 PGDKMAGRHGNKGVVSRILPIEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAA 1140 PGDKMAGRHGNKGVVS I+P+EDMPH A+GTP DIVLNPLGVPSRMNVGQ+LE HLG AA Sbjct: 1079 PGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAA 1138 Query: 1141 KGLGLRLGEMVQAQAKVAELRKFLTTIYNE-SGKQEELDSFTDEEIIELVENLKKGVPFA 1199 KGLG ++ M++ Q KVAELRKFL IYNE G++E LD D EI+ L +NL+ GVP A Sbjct: 1139 KGLGEKINRMLEEQRKVAELRKFLHEIYNEIGGREENLDELGDNEILALAKNLRGGVPMA 1198 Query: 1200 TPVFDGAHEEETRRMLDLAYPDPIAKQLGMTPSKNQVTMYDGRTGEAFERTVTVGYMHYL 1259 TPVFDGA E E + ML LA P Q+ ++DGRTG FER TVGYM+ L Sbjct: 1199 TPVFDGAKEREIKAMLKLAD----------LPESGQMRLFDGRTGNQFERPTTVGYMYML 1248 Query: 1260 KLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTV 1319 KL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQEMLTV Sbjct: 1249 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1308 Query: 1320 KSDDVNGRTKVYENLVKGRH 1339 KSDDVNGRTK+Y+N+V G H Sbjct: 1309 KSDDVNGRTKMYKNIVDGDH 1328 >XF2633 [K] COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit Xfa Xylella fastidiosa 9a5c Length = 1388 Score = 1817 bits (4707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 887/1365 (64%), Positives = 1080/1365 (79%), Gaps = 41/1365 (3%) Query: 3 YSFTEKKRIRKSFAKRANVHNVPFLLATQIESYQNFLQPERAASERKNEGLQSAFTSIFP 62 YSFTEKKRIRK F K ++ VPFLLA Q++SY+ FLQ + +S+RK+ GL +A S+FP Sbjct: 8 YSFTEKKRIRKDFGKHRSILKVPFLLAIQVDSYRAFLQGDVESSQRKDIGLHAALKSVFP 67 Query: 63 IVSHNGFARLEFLSYVLGAPPFDVKECQQRGLTFASPLRAKVRLVILDKESPTKPVVKEM 122 IVS++G A LE++ Y LG P FD +EC+QRG+++ +PLR VRLVI D+ES TK VK + Sbjct: 68 IVSYSGNAALEYVGYKLGEPMFDERECRQRGMSYGAPLRVTVRLVIYDRESSTK-AVKYI 126 Query: 123 KEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARII 182 KEQEVY+GE+PLMT G+F++NGTERVIVSQLHRSPGVFF+HDRGKTHSSGKLL+SARII Sbjct: 127 KEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARII 186 Query: 183 PYRGSWLDFEFDPKDILFFRVDRRRKMPVTILLKAIGMTSEQILANFFVFDNFNLHAE-G 241 P RGSWLDFEFDPKD LF R+DRRRK+PV+ILL+A+G ++E+IL FF + F+++ + G Sbjct: 187 PCRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEILGEFFEINTFHINPDKG 246 Query: 242 ADMEFVSERLRGEVARFDITDKSGKVMVAKDKRINAKHVRDIEAAGIKHISVPEDYLLGR 301 +E V ERLRGE+ F++TD G V+V KRI A+HV+ +EA+GI ++VP++YL+GR Sbjct: 247 VQLELVPERLRGEILSFNLTDGGG-VIVEAGKRITARHVKQLEASGISALAVPDEYLIGR 305 Query: 302 VLAKNIVDPETGEVVASANDELTEELLAKLREANISAIQTLYTNDLDQGGYISQTLRTDD 361 +L+ +++D TGE++ASAN E+ E+ + R+A I ++ TL+ NDLD+G Y+S TLR D Sbjct: 306 ILSHDVIDATTGELLASANSEVNEDRIVAFRKAGIDSVGTLWVNDLDRGAYLSNTLRIDP 365 Query: 362 TADQTAARVAIYRMMRPGEPPTEESVEALFNGLFYSEDRYDLSAVGRMKFNRRVGRDELT 421 T Q A+V IYRMMRPGEPPT+E+ + LF+ LF++ DRYDLS VGRMKFNRRVGR E+ Sbjct: 366 TRTQLEAQVEIYRMMRPGEPPTKEAAQNLFHNLFFTFDRYDLSMVGRMKFNRRVGRKEVA 425 Query: 422 GTMTL--------SND--------------DILAVIKILVELRNGRGEVDDIDHLGNRRV 459 G L ND DIL VIK L E+RNGRG VDDIDHLGNRRV Sbjct: 426 GEPVLYDKKYFSDRNDEESRRLVSKLGETSDILDVIKGLCEIRNGRGVVDDIDHLGNRRV 485 Query: 460 RCVGELAENQFRAGLVRVERAVKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQ 519 R VGE+AEN FR GLVRVERAVKERL AE++ L P +LIN+KP++AAI+EFFGSSQLSQ Sbjct: 486 RSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQ 545 Query: 520 FMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 579 FMDQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVH +HYG +C IETPEGPNIGLIN Sbjct: 546 FMDQNNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHLSHYGCLCTIETPEGPNIGLIN 605 Query: 580 SLALYARLNEYGFLETPYRKVEGSKVTNQIDYLSAIEEGRYVIAQANATIDGEGKLSDEL 639 SLA++AR N+YGFLETPYRKV +VT++++YLSAIEE +YVIAQAN D G+L++ Sbjct: 606 SLAVFARTNQYGFLETPYRKVVEGRVTDEVEYLSAIEENQYVIAQANTLTDDNGQLTESF 665 Query: 640 VSAREAGETILVSPERVQYMDVAPGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCL 699 V R GE++L P V YMDV+P Q VSVAA+L+PFLEHDDANRALMGANMQRQAVP L Sbjct: 666 VPCRFQGESLLKPPSYVHYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPTL 725 Query: 700 RPEKPLVGTGIERTVAVDSGTTVQALRGGVVDYVDAGRVVIRVNDDE-AQAGEVGVDIYN 758 R +KPLVGTGIERTVA DSG TV A RGGV+D VDAGR+V++VN+ E A + GVDIY Sbjct: 726 RAQKPLVGTGIERTVARDSGVTVNARRGGVIDQVDAGRIVVKVNESEIIGATDAGVDIYG 785 Query: 759 LIKYTRSNQNTNINQRPIVKIGDRVAKHDVIADGASTDMGELALGQNMLVAFMPWNGYNF 818 LIKYTRSNQNT INQRP+V +GD V DV+ADG STD+GELALGQNML+AFMPWNGYNF Sbjct: 786 LIKYTRSNQNTCINQRPLVNVGDIVTSGDVLADGPSTDIGELALGQNMLIAFMPWNGYNF 845 Query: 819 EDSILISEKVVADDRYTSIHIEELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVY 878 EDSIL+SE+VV +DRYT+IHIEEL+ +ARDTKLG+EEI+ DI N++E L RLDESG+VY Sbjct: 846 EDSILLSERVVEEDRYTTIHIEELTCIARDTKLGSEEISADIPNVSEQALNRLDESGVVY 905 Query: 879 IGAEVEAGDTLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQ 938 IGAEV AGD LVGKVTPKGE+QLTPEEKLLRAIFGEKASDVKD+SLRVP GM GTVIDVQ Sbjct: 906 IGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDVQ 965 Query: 939 VFTREGIQRDKRAQQIIDDELKRYRLDLNDQLRIVEGDAFQRLERLLIGKVANGGPKKLV 998 VFTR+GI++DKRA QI + E+KR + D +DQ RI+EG + RL ++GKV N G + Sbjct: 966 VFTRDGIEKDKRAHQIEEYEIKRVKKDFDDQFRILEGAIYARLRSQIVGKVVNSGV-DIK 1024 Query: 999 KGTKLDKAYLDDLDKFHWFDIRPADDDIANALEAIKESIAEKRHQFDLAFEEKRKKLTQG 1058 KG + AYLD L K WF +R D+ A++ ++ I + +FD F +KR K+TQG Sbjct: 1025 KGEVITGAYLDGLKKSDWFALRMKDEVAVEAIDRAQKQIQAYQKEFDQRFSDKRSKITQG 1084 Query: 1059 DELPPGVQKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSRILPIEDMPHMADGTPADIVLN 1118 D+L PGV KMVKV+LAVKR +QPGDKMAGRHGNKGVVS ++P+EDMP M DGTP DIVLN Sbjct: 1085 DDLAPGVLKMVKVFLAVKRCIQPGDKMAGRHGNKGVVSNVVPVEDMPFMEDGTPVDIVLN 1144 Query: 1119 PLGVPSRMNVGQVLEVHLGWAAKGLGLRLGEMVQAQAKVAELRKFLTTIYNES----GKQ 1174 PLGVPSRMN+GQ+LEVHLGWAAKGLG R+ M++A A +A+LRKFL IYN G++ Sbjct: 1145 PLGVPSRMNIGQILEVHLGWAAKGLGHRIQRMLEANAAIADLRKFLNEIYNHDKSVVGER 1204 Query: 1175 EELDSFTDEEIIELVENLKKGVPFATPVFDGAHEEETRRMLDLAYPDPIAKQLGMTPSKN 1234 +L F+D+E++ + +NL GVP A+PVFDGA E+E +RMLDLA P+ Sbjct: 1205 VDLSQFSDDELLNMAKNLTDGVPMASPVFDGASEQEIKRMLDLAE----------LPTGG 1254 Query: 1235 QVTMYDGRTGEAFERTVTVGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQ 1294 Q +YDG TGE F+R TVGYMHYLKL+HLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQ Sbjct: 1255 QTQLYDGHTGEPFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQ 1314 Query: 1295 RFGEMEVWALEAYGASYVLQEMLTVKSDDVNGRTKVYENLVKGRH 1339 RFGEMEVWALEAYGA+Y LQEMLTVKSDDV GR ++Y+N+V G H Sbjct: 1315 RFGEMEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGDH 1359