BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0087.p         (148 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1607 [K] COG1733 Predicted transcriptional regulators Pae Pseu...   140   1e-33
SMa1960 [K] COG1733 Predicted transcriptional regulators Sme Sin...   122   3e-28
PA0116 [K] COG1733 Predicted transcriptional regulators Pae Pseu...   105   4e-23
CC0895 Non COG                                                        102   3e-22
CC0645 Non COG                                                         99   3e-21

>PA1607 [K] COG1733 Predicted transcriptional regulators Pae Pseudomonas
           aeruginosa
          Length = 146

 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 97/146 (66%), Gaps = 1/146 (0%)

Query: 1   MPSHADHHEEHCPVARSVDVVGDRWALLIVRDAFDGIRRFGDFQRNLSVSKNILADRLRK 60
           M     H +  CPVAR +DV+GD W++LIVRDAF+G+ RFG+FQ++L ++KNILA RLR 
Sbjct: 1   MVKRTSHKQASCPVARPLDVIGDGWSMLIVRDAFEGLTRFGEFQKSLGLAKNILAARLRN 60

Query: 61  LVDANILEMQAASDGTSYQEYVLTEAGLGLFPLVVALRQWGEAHLFKRGEKHSVLIDTET 120
           LV+  ++    A  G S+QEY LT+ G  LFPL+VA+RQWGE + F   E H  L++ ++
Sbjct: 61  LVEHGVMVAVPAESG-SHQEYRLTDKGRALFPLLVAIRQWGEDYFFAPDESHVRLVERDS 119

Query: 121 GKPVSYMAPMSRDGSHLNPARTLVRK 146
           G+PV  +   + DGS L    T V +
Sbjct: 120 GQPVPRLQVRAGDGSPLAAEDTRVSR 145


>SMa1960 [K] COG1733 Predicted transcriptional regulators Sme Sinorhizobium
           meliloti
          Length = 125

 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/121 (49%), Positives = 85/121 (70%), Gaps = 1/121 (0%)

Query: 27  LLIVRDAFDGIRRFGDFQRNLSVSKNILADRLRKLVDANILEMQAASDGTSYQEYVLTEA 86
           +LIVRDAFDG+ RFG+FQ++L +++NIL  RLR LVD  ILE    S+G + QEY LT+ 
Sbjct: 1   MLIVRDAFDGVTRFGEFQKSLGIARNILTARLRTLVDRGILEAVPISEGGARQEYRLTQM 60

Query: 87  GLGLFPLVVALRQWGEAHLFKRGEKHSVLIDTETGKPVSYMAPMSRDGSHLNPARTLVRK 146
           G  LFP++VALRQ+GE HLF   EK S L++  TG+P+  +  ++ DG  +N   T++ K
Sbjct: 61  GRDLFPVMVALRQFGERHLFAPNEKRSKLVERSTGRPIR-LDVLTEDGRPVNSEETVILK 119

Query: 147 V 147
           +
Sbjct: 120 I 120


>PA0116 [K] COG1733 Predicted transcriptional regulators Pae Pseudomonas
           aeruginosa
          Length = 157

 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 85/139 (61%), Gaps = 13/139 (9%)

Query: 9   EEHCPVARSVDVVGDRWALLIVRDAFDGIRRFGDFQRNLSVSKNILADRLRKLVDANILE 68
           E+ C +AR + ++GDRW LL++RD F G+RRF DF+R+L V++++LADRL++LV+A IL 
Sbjct: 8   EQPCSLARVLAILGDRWTLLVLRDCFLGVRRFDDFERSLGVTRHVLADRLKRLVEAEILA 67

Query: 69  MQAASDGTSYQEYVLTEAGLGLFPLVVALRQWGEAHL-------FKRGEKHS------VL 115
                +    +EY LTE G+ L+P +++L  WG+ HL        +   KH       VL
Sbjct: 68  KVPYQERPLREEYRLTEKGMELYPAILSLVNWGDRHLAGVEGPPLEHVHKHCGQHMHGVL 127

Query: 116 IDTETGKPVSYMAPMSRDG 134
           + +E G+P+       R+G
Sbjct: 128 VCSECGEPLHARDVTVREG 146


>CC0895 Non COG
          Length = 167

 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 1/120 (0%)

Query: 1   MPSHADHHEEHCPVARSVDVVGDRWALLIVRDAFDGIRRFGDFQRNLSVSKNILADRLRK 60
           M   AD+  E C VA +++VVGD W LLI+RDAF G++RF  +Q  L V++N+LA RL+ 
Sbjct: 1   MGRTADYTNERCSVAATLEVVGDPWTLLILRDAFAGVKRFEQWQDRLGVARNVLAARLKT 60

Query: 61  LVDANILEMQAASDGTSYQEYVLTEAGLGLFPLVVALRQWGEAHLFKRGEKHSVLIDTET 120
           LV   ++E +  S+     EY LTE GL L P+++ + +WG+ H++ R +K  VL   +T
Sbjct: 61  LVSHGVMETRRYSERPPRHEYWLTEKGLALSPVLLTMAEWGDRHVYGR-DKSPVLFRHKT 119


>CC0645 Non COG
          Length = 188

 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 82/143 (57%), Gaps = 13/143 (9%)

Query: 6   DHHEEHCPVARSVDVVGDRWALLIVRDAFDGIRRFGDFQRNLSVSKNILADRLRKLVDAN 65
           D   + C ++R++ V+GDRW L+I+RD F G+RRF  FQ+ L VS+ I+ DRLR LV+A 
Sbjct: 41  DLSAQPCSISRALAVIGDRWTLMILRDCFLGVRRFELFQKRLGVSRTIVTDRLRTLVEAG 100

Query: 66  ILEMQAASDGTSYQEYVLTEAGLGLFPLVVALRQWGEAH--------LFKR-----GEKH 112
           +L      D     EY LTE GL L P+V+A+  +G+ H        + +R      + H
Sbjct: 101 VLRRVPYQDHPVRHEYRLTEKGLDLHPVVMAIAHFGDIHYAGAEGPPVLRRHKGCGCDFH 160

Query: 113 SVLIDTETGKPVSYMAPMSRDGS 135
            V + +E G+PVS     +R G+
Sbjct: 161 PVQVCSECGEPVSARQVEARAGA 183