BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0070.p (650 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1027 [T] COG5001 Predicted signal transduction protein contai... 655 0.0 CC0896 Non COG 535 e-151 RSc1545 [T] COG5001 Predicted signal transduction protein contai... 284 6e-76 SMc00887_2 [T] COG2200 FOG Sme Sinorhizobium meliloti 194 4e-49 mlr5176_3 [T] COG2200 FOG Mlo Mesorhizobium loti 193 1e-48 >AGl1027 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 648 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/650 (51%), Positives = 437/650 (67%), Gaps = 2/650 (0%) Query: 1 MRLSSWMSSLRNYWRVDHERPQLVIAQYQAFSTKMPMMYLILIINSWALAYTYLDLAPLW 60 M++ + L ++ V + P L+ AQY+AF+ +MPMMY IL+ ++WALA T++ LAP W Sbjct: 1 MKILIAIQKLLDFMSVRSDNPDLLKAQYRAFTRQMPMMYFILLSSTWALASTHMQLAPFW 60 Query: 61 LGLYFPAVLSVLCSVRLLFWWRNRHLVPTPVAAAQALRRTNLLVAPIALSFSLWSIMLFP 120 L + PAV ++ C++R+ FWWR R + P P A ALRRTN L A IAL+F+LWS +L P Sbjct: 61 LTVGVPAVFTIGCTLRVAFWWRTRGIDPRPEVALAALRRTNRLAAGIALAFTLWSFLLVP 120 Query: 121 YGNAYAQAHVAFYMGITVICCIFCLMYLRSAALTGALIVNGIFTVFFLSTHIPVFVAAAL 180 +G+AY ++HVAFYM ITVI CIFCLMY+RSAA +IVNG F FF+++ P F+A A+ Sbjct: 121 HGDAYTRSHVAFYMAITVISCIFCLMYVRSAAFMVTVIVNGAFIAFFVASRQPTFIAIAI 180 Query: 181 NVVLVTIGMLVIVNSHYEDFTRLVEAQLRTAVLSDENLQLANVDSLTQIPNRRKFFAQLN 240 NV+LV GM+ I+ ++Y +F R+V +Q RT LS+ENL LAN+DSLT +PNRR FFA L Sbjct: 181 NVLLVCAGMMSILLTNYRNFERMVISQQRTEALSNENLLLANIDSLTGLPNRRAFFAHLE 240 Query: 241 EICARAHGAQQRFAVAILDLDGFKAVNDLYGHSHGDRLLEQVGQRLLAACRDPALHLARL 300 A A R A+ ++DLDGFK VNDLYGHS GDRLL V +RL A + A RL Sbjct: 241 VELANAREKGTRLALGVIDLDGFKPVNDLYGHSVGDRLLINVSKRLTANLK--ASKAFRL 298 Query: 301 GGDEFALIIDRDLSDAALQEIGQQLCHTLRPAFVLDKAVVQIAASVGVATFPDMAADAAA 360 GGDEFA++ DA L + LR + + + V ++AS+G+A FP +A+ Sbjct: 299 GGDEFAIVAPIIPDDAQLVANANAISEELRAPYHMPEGTVHVSASMGIAVFPHLASTLEQ 358 Query: 361 LYEHADYALYQGKRERRGTVTLFSEHDKAQIRRKSNIEQALRLADFERELSVFFQPIVRL 420 L++ ADYALY K+ RRG LF + QI ++ IE L+ +D + ELSV FQPIV + Sbjct: 359 LFDRADYALYHAKKTRRGDAVLFDAEHEKQINIEARIEHLLKQSDLKNELSVMFQPIVDI 418 Query: 421 DDGQVIAFEALARWHSTVKGAVSPVEFIPAAERMGIINQLSVILLRKALAAAASWPAQIR 480 DG+ FEALARWHS V G V P +F AER GI+ L+ LL+ ALA+A++W +R Sbjct: 419 RDGKTAGFEALARWHSPVLGHVPPAQFFAIAERAGIVGSLTRPLLKMALASASTWDPSLR 478 Query: 481 LSFNLSANDINSSEGMAAIIKLIRESGFCPSRLDLEITETALLQDLEKTRQLIHSLRQLG 540 LSFNLSA D+N EG+ ++I +I S F RLDLEITETA D E+ RQ + LR+LG Sbjct: 479 LSFNLSAQDLNCHEGVLSLIGIIENSCFDTRRLDLEITETAFAHDFEQVRQSVDMLRRLG 538 Query: 541 CGITLDDFGTGYASLSHLHALPLTRIKIDKSFVADIGQDAVSLKIVKSLLALTLDMDLAC 600 CGI+LDDFGTGY+SL+ LHALPLT+IKID+SFV D+ + S KIVKSLLAL+ DM+L C Sbjct: 539 CGISLDDFGTGYSSLTRLHALPLTKIKIDRSFVTDLHEKPASYKIVKSLLALSRDMELEC 598 Query: 601 VVEGLETPQHLAVLRELGAVYGQGYLYARPMAADDVAPWLAQRAARVQAG 650 VVEG+ET L L LGA QGY+YA P+ DVA +L+ A V G Sbjct: 599 VVEGVETSAELTTLEGLGATLVQGYIYAPPLREWDVAAFLSGPRAVVGTG 648 >CC0896 Non COG Length = 677 Score = 535 bits (1377), Expect = e-151, Method: Compositional matrix adjust. Identities = 284/642 (44%), Positives = 413/642 (64%), Gaps = 8/642 (1%) Query: 10 LRNYWRVDHERPQLVIAQYQAFSTKMPMMYLILIINSWALAYTYLDLAPLWLGLYFPAVL 69 +RN + + ++P+LVIAQ +A + ++P+MY++++ N++ALA ++L +APLWL + PA+L Sbjct: 11 IRNLFAIRRDQPELVIAQARALAWQVPLMYVVVLANAYALAASHLRVAPLWLNIGLPALL 70 Query: 70 SVLCSVRLLFWWRNRHLVPTPVAAAQALRRTNLLVAPIALSFSLWSIMLFPYGNAYAQAH 129 +V+C++R + W + P AA+ L T +A F+ WS+ L+PYG+AY +AH Sbjct: 71 TVVCAIRGVGWLKIGRAGVDPERAARMLAGTLKTSGFLAALFAGWSLALYPYGDAYQKAH 130 Query: 130 VAFYMGITVICCIFCLMYLRSAALTGALIVNGIFTVFFLSTHIPVFVAAALNVVLVTIGM 189 +AFYM ITVI CIFCLM+LR AA+ L+V G VFF +T PVF A A N+V+V+ M Sbjct: 131 IAFYMSITVIACIFCLMHLRGAAILVTLVVLGSMVVFFGTTGQPVFQAMAANIVVVSAVM 190 Query: 190 LVIVNSHYEDFTRLVEAQL-------RTAVLSDENLQLANVDSLTQIPNRRKFFAQLNEI 242 +VI+ + Y +F+ LV++++ LSDEN +LAN+DSLT +PNRR++FA+L+ Sbjct: 191 IVILLTQYREFSDLVQSRVTLTQKAEEARRLSDENDRLANLDSLTDLPNRRRYFAELDAR 250 Query: 243 CARAHGAQQRFAVAILDLDGFKAVNDLYGHSHGDRLLEQVGQRLLAACRDPALHLARLGG 302 A + + F ++DLD FK +ND +GH+ GDRLL +VG+RL A P L ARLGG Sbjct: 251 VEAARQSGRGFVAGVIDLDDFKPINDAFGHATGDRLLIEVGRRLKAFDGAPILA-ARLGG 309 Query: 303 DEFALIIDRDLSDAALQEIGQQLCHTLRPAFVLDKAVVQIAASVGVATFPDMAADAAALY 362 DEF LIID L AL+ +G++LC +L+ + L Q+ AS+G FP A + L+ Sbjct: 310 DEFGLIIDAALEPDALRVLGRELCASLQATYDLRGVRAQVGASIGFCPFPSGADTSEQLF 369 Query: 363 EHADYALYQGKRERRGTVTLFSEHDKAQIRRKSNIEQALRLADFERELSVFFQPIVRLDD 422 E ADYALY K+ +G +F E +A IR + +EQALR AD E+E+SV FQP+V + Sbjct: 370 ERADYALYHAKQNGKGAAVVFDERHEAAIRDMAVVEQALRSADLEQEMSVHFQPLVDIVS 429 Query: 423 GQVIAFEALARWHSTVKGAVSPVEFIPAAERMGIINQLSVILLRKALAAAASWPAQIRLS 482 + IA EALARW S G + P FI AAER G I +++ +L+ KAL +WP +R+S Sbjct: 430 QRTIALEALARWTSPEIGPIRPDVFIGAAERSGQIVEITRLLVAKALREMRAWPMDVRVS 489 Query: 483 FNLSANDINSSEGMAAIIKLIRESGFCPSRLDLEITETALLQDLEKTRQLIHSLRQLGCG 542 NLSA DI S E + ++ ++ ES P R+D EITETA++ D ++ R + + +LG Sbjct: 490 INLSARDIASMENVRRLLAIVSESCIAPHRIDFEITETAIVCDFDQARDALAAFHELGVR 549 Query: 543 ITLDDFGTGYASLSHLHALPLTRIKIDKSFVADIGQDAVSLKIVKSLLALTLDMDLACVV 602 LDDFGTG++SLSHL LPL ++KID SFV+DI + S IV+++L L ++ + CVV Sbjct: 550 TALDDFGTGHSSLSHLRLLPLDKLKIDASFVSDIEHNPTSEDIVRTVLQLGRNLRMECVV 609 Query: 603 EGLETPQHLAVLRELGAVYGQGYLYARPMAADDVAPWLAQRA 644 EG+ET + LGA QGY +ARPM A+ V +L A Sbjct: 610 EGVETEAQRDRVAALGATVMQGYHFARPMPAEAVPGYLNGEA 651 >RSc1545 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Rso Ralstonia solanacearum Length = 776 Score = 284 bits (726), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 171/440 (38%), Positives = 247/440 (56%), Gaps = 13/440 (2%) Query: 201 TRLVEAQLRTAVLSDENLQLANVDSLTQIPNRRKFFAQLNEICARAHGAQQRFAVAILDL 260 T+ VEA+ R QLA+ D+LT + NR F QL+ AR + R + +DL Sbjct: 329 TKEVEAENRIR-------QLAHYDTLTGLANRTNFREQLD---ARLAAPEARLGLLYIDL 378 Query: 261 DGFKAVNDLYGHSHGDRLLEQVGQRLLAACRDPALHLARLGGDEFALIIDRDLSDAALQE 320 DGFK VND GH GD LLE+V QRL A C P + +ARLGGDEFA+++ D +D A Sbjct: 379 DGFKLVNDTKGHRAGDALLERVAQRLRAVCDRPGMAIARLGGDEFAVLVPHDDADRA-AT 437 Query: 321 IGQQLCHTLRPAFVLD-KAVVQIAASVGVATFPDMAADAAALYEHADYALYQGKRERRGT 379 + L L + L V+I AS+G+A P D L AD ALY K +G Sbjct: 438 LATALIEALGAPYALGADQNVRIGASIGIALAPAHGRDTENLLARADIALYAAKAAGKGL 497 Query: 380 VTLFSEHDKAQIRRKSNIEQALRLA-DFERELSVFFQPIVRLDDGQVIAFEALARWHSTV 438 LF + +I+ ++ +E LR A + + L VF+QPIV + G+V A EAL RWH Sbjct: 498 ARLFCADMETRIQARALLEAQLRAALEHQDRLFVFYQPIVDVATGKVTAREALVRWHHAE 557 Query: 439 KGAVSPVEFIPAAERMGIINQLSVILLRKALAAAASWPAQIRLSFNLSANDINSSEGMAA 498 +G V P EF+P AE+ G+I+QL +L +A A W R++ N+S + + Sbjct: 558 RGWVPPDEFVPIAEQSGLIDQLGRFVLHRACREATRWEDGARVAVNVSPMQLGKATLAQT 617 Query: 499 IIKLIRESGFCPSRLDLEITETALLQDLEKTRQLIHSLRQLGCGITLDDFGTGYASLSHL 558 + + +SG P RL++E+TETAL+Q+ ++ + + L +G + LDDFGTGY+SL+HL Sbjct: 618 VHAALIDSGLAPDRLEIEVTETALIQNEAESFEDLRQLYDMGVRVALDDFGTGYSSLAHL 677 Query: 559 HALPLTRIKIDKSFVADIGQDAVSLKIVKSLLALTLDMDLACVVEGLETPQHLAVLRELG 618 A P +IKID+SFV D+ + S +V+++ L + + V EG+ET H+ +RE G Sbjct: 678 RAFPFDKIKIDRSFVRDLLERPDSAVLVRAIADLGRQLGVTTVAEGVETQAHVRGIREAG 737 Query: 619 AVYGQGYLYARPMAADDVAP 638 QGY Y RP +D+ P Sbjct: 738 CTEAQGYYYGRPAPSDEDRP 757 Score = 214 bits (546), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 101/207 (48%), Positives = 145/207 (70%) Query: 1 MRLSSWMSSLRNYWRVDHERPQLVIAQYQAFSTKMPMMYLILIINSWALAYTYLDLAPLW 60 M + + + + V + P+L+ AQY+AFS ++PMMY ILI ++WA+A TY + P W Sbjct: 1 MTMKALAGRVARFMGVPADNPELLKAQYRAFSRQLPMMYFILISSTWAVALTYRAITPAW 60 Query: 61 LGLYFPAVLSVLCSVRLLFWWRNRHLVPTPVAAAQALRRTNLLVAPIALSFSLWSIMLFP 120 L + P +L++ C++R+L WW++R + PTP A AL RTN L + IA+SF+ WS+ LF Sbjct: 61 LTVGIPLLLTLACAIRVLHWWQSRRIDPTPELALGALTRTNRLASVIAVSFTAWSLALFH 120 Query: 121 YGNAYAQAHVAFYMGITVICCIFCLMYLRSAALTGALIVNGIFTVFFLSTHIPVFVAAAL 180 YG+AY ++++AFYM ITVI CIFCLM+LRSAA+T IVNG F FF +T P F+A A+ Sbjct: 121 YGDAYTRSYLAFYMAITVIACIFCLMHLRSAAITVTAIVNGAFIAFFAATGQPTFIAIAI 180 Query: 181 NVVLVTIGMLVIVNSHYEDFTRLVEAQ 207 N+ LV+ G+LVI+ +Y DFT +V AQ Sbjct: 181 NMALVSFGLLVILMVNYRDFTLMVNAQ 207 >SMc00887_2 [T] COG2200 FOG Sme Sinorhizobium meliloti Length = 269 Score = 194 bits (494), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 106/261 (40%), Positives = 154/261 (59%) Query: 382 LFSEHDKAQIRRKSNIEQALRLADFERELSVFFQPIVRLDDGQVIAFEALARWHSTVKGA 441 ++S+ +++ + +EQALR A + V FQPIV L + + FEALARW G Sbjct: 1 VYSQEIAQEMKHATQLEQALRNAIIAGGIDVHFQPIVDLRSDRPVGFEALARWCDADLGY 60 Query: 442 VSPVEFIPAAERMGIINQLSVILLRKALAAAASWPAQIRLSFNLSANDINSSEGMAAIIK 501 VSP F+P AE G I+ LS +LLRKA AA SWP + LSFNLS+ + A ++ Sbjct: 61 VSPAVFVPFAEERGFIDALSEMLLRKAARAALSWPEDLFLSFNLSSVQLMDPATSARLLA 120 Query: 502 LIRESGFCPSRLDLEITETALLQDLEKTRQLIHSLRQLGCGITLDDFGTGYASLSHLHAL 561 +I + G P RL+LEITETA + D ++++ LR G ++LDDFGTG +SL L Sbjct: 121 IIAQVGLDPRRLELEITETAAMADAGTAQRIVTELRAAGVRVSLDDFGTGQSSLGRLRDF 180 Query: 562 PLTRIKIDKSFVADIGQDAVSLKIVKSLLALTLDMDLACVVEGLETPQHLAVLRELGAVY 621 L ++KID++FV+ I D S IVK+++++ ++LA V EG+E L+ LG Sbjct: 181 SLDKVKIDRTFVSGISTDRTSEHIVKAIVSMCEGLELAVVAEGIEHSSEALKLKALGCGL 240 Query: 622 GQGYLYARPMAADDVAPWLAQ 642 GQGY Y +P AD +L++ Sbjct: 241 GQGYFYGKPADADATLRYLSE 261 >mlr5176_3 [T] COG2200 FOG Mlo Mesorhizobium loti Length = 285 Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 103/249 (41%), Positives = 154/249 (61%), Gaps = 1/249 (0%) Query: 389 AQIRRKSNIEQALRLADFERELSVFFQPIVRLDDGQVIAFEALARWHSTVKGAVSPVEFI 448 A R + ++ LR A + L V +QPIV ++ ++ + EAL RW G +SP FI Sbjct: 6 AAFRNRQLMKADLRSAVESKSLRVVYQPIVAMNTMRIASCEALCRWDHPDLGPISPSIFI 65 Query: 449 PAAERMGIINQLSVILLRKALAAAASWPAQIRLSFNLSANDINSSEGMAAIIKLIRESGF 508 P AE MGII+++S +L+ A A WP Q +S NLSA D S + + + + SG Sbjct: 66 PLAEEMGIISEISTFVLQAACTECAKWPDQTSVSVNLSAKDFRSRDVIQKVRDALASSGL 125 Query: 509 CPSRLDLEITETALLQDLEKTRQLIHSLRQLGCGITLDDFGTGYASLSHLHALPLTRIKI 568 RL++E+TETALL D TRQ I L+Q+G I LDDFGTGY+SLS+LH LPL +IKI Sbjct: 126 AAGRLEIEVTETALLDDKSLTRQYIEELKQIGVRIALDDFGTGYSSLSYLHKLPLDKIKI 185 Query: 569 DKSFVADIGQDAVSLKIVKSLLALTLDMDLACVVEGLETPQHLAVLR-ELGAVYGQGYLY 627 D+SF+ D+ Q+A SL+++K ++ L+ + L+ VEG+ET + L +L ++ QG+L+ Sbjct: 186 DRSFLMDVTQNARSLELLKGIVNLSRPLGLSVTVEGVETFEQLKILALQVKPDLVQGFLF 245 Query: 628 ARPMAADDV 636 ++A + Sbjct: 246 GAALSASGI 254