BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0029.p (208 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1037 [S] COG2860 Predicted membrane protein Pae Pseudomonas ae... 210 1e-54 HI1240 [S] COG2860 Predicted membrane protein Hin Haemophilus in... 192 4e-49 PM0935 [S] COG2860 Predicted membrane protein Pmu Pasteurella mu... 192 5e-49 STM3738 [S] COG2860 Predicted membrane protein Sty Salmonella ty... 183 2e-46 VC2115 [S] COG2860 Predicted membrane protein Vch Vibrio cholerae 180 2e-45 >PA1037 [S] COG2860 Predicted membrane protein Pae Pseudomonas aeruginosa Length = 206 Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 106/199 (53%), Positives = 143/199 (71%), Gaps = 3/199 (1%) Query: 1 MLLHTIYLIAICAEAISGALMGIRKDMDIFGVCLIGTVAALGGGTVRDILIGHYPLGWVA 60 MLL +Y+IAI AEA++GAL R+ MD+FGV LI V ALGGG+VRD+L+GHYPL WV Sbjct: 1 MLLTVLYIIAITAEAMTGALSAGRRSMDLFGVVLIACVTALGGGSVRDMLLGHYPLTWVR 60 Query: 61 HPEYLAFTICAAVVAAVAARALHHFKSAFLVVDALGLVAFTVIGCDIARGFADFHPAIVV 120 HPEYLA T AA+V A + H +S FLV+DA+GLVAFT+IGC ++ H ++ Sbjct: 61 HPEYLALTAVAALVTVFIAPLMRHLRSLFLVLDAVGLVAFTLIGCQVSLEMG--HSLLIA 118 Query: 121 ML-GMVTGVFGGLLRDVLCNEIPLVLRREIYASVSLLTGATYVGVLHLQVDPRIATMSSL 179 + G++TGVFGG+LRD+LCN++PL+ RRE+YASVS + Y+ + L++ A + +L Sbjct: 119 AISGVITGVFGGILRDILCNDVPLIFRRELYASVSFASAWCYLICVELELPSEQAMLITL 178 Query: 180 LLGFAVRLLAIRFHWELPR 198 GF RLLAIRFHWE+P+ Sbjct: 179 FSGFLFRLLAIRFHWEMPK 197 >HI1240 [S] COG2860 Predicted membrane protein Hin Haemophilus influenzae Length = 220 Score = 192 bits (488), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 98/208 (47%), Positives = 137/208 (65%), Gaps = 5/208 (2%) Query: 1 MLLHTIYLIAICAEAISGALMGIRKDMDIFGVCLIGTVAALGGGTVRDILIGHYPLGWVA 60 MLL +Y+I I AE ++GAL R+ MDIFGV +I +V A+GGG+VRD+L+GHYPLGWV Sbjct: 1 MLLSILYIIGITAEGMTGALAAGREKMDIFGVIIIASVTAIGGGSVRDVLLGHYPLGWVK 60 Query: 61 HPEYLAFTICAAVVAAVAARALHH----FKSAFLVVDALGLVAFTVIGCDIARGFADFHP 116 HPEY AAV+ A ++H F++ FLV+DA+GLV +++IG IA Sbjct: 61 HPEYFLMVASAAVITVYVAPFINHFMRYFRTIFLVLDAMGLVVYSIIGAQIAMDMGH-SL 119 Query: 117 AIVVMLGMVTGVFGGLLRDVLCNEIPLVLRREIYASVSLLTGATYVGVLHLQVDPRIATM 176 IV + G +TG FGG+LRD+LCN IPLV ++E+YAS++L TY + LQV+ +A + Sbjct: 120 TIVCIAGCITGAFGGVLRDMLCNRIPLVFQKELYASIALFATLTYYALSTLQVEHTLAVL 179 Query: 177 SSLLLGFAVRLLAIRFHWELPRMDKDRV 204 +L+ F +RLLAI F W LP + + Sbjct: 180 LTLINSFTLRLLAIHFEWGLPVFNYQEL 207 >PM0935 [S] COG2860 Predicted membrane protein Pmu Pasteurella multocida Length = 226 Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 96/207 (46%), Positives = 137/207 (66%), Gaps = 5/207 (2%) Query: 1 MLLHTIYLIAICAEAISGALMGIRKDMDIFGVCLIGTVAALGGGTVRDILIGHYPLGWVA 60 MLL +Y+I I AEAI+GAL R+ MDIFGV +I + A+GGG+VRD+L+GHYP+GWV Sbjct: 1 MLLSVLYIIGITAEAITGALAAGREKMDIFGVIIIAAMTAIGGGSVRDVLLGHYPIGWVK 60 Query: 61 HPEYLAFTICAAV----VAAVAARALHHFKSAFLVVDALGLVAFTVIGCDIARGFADFHP 116 +P Y AAV + + R +H+F + FLV+DALGL+ F++IG +A + Sbjct: 61 NPHYFLIVAGAAVLTVFIVPLIRRFMHYFHTVFLVLDALGLIVFSIIGAQVALDMG-YGF 119 Query: 117 AIVVMLGMVTGVFGGLLRDVLCNEIPLVLRREIYASVSLLTGATYVGVLHLQVDPRIATM 176 I V+ ++TG FGG+LRD+LCN IPLV ++E+YAS++L+ A Y+G+ L +D + + Sbjct: 120 TIAVIAAIITGAFGGVLRDLLCNRIPLVFQKELYASIALIATAIYIGLQQLNIDHNLVII 179 Query: 177 SSLLLGFAVRLLAIRFHWELPRMDKDR 203 +L+ GF RLLAI F W LP D Sbjct: 180 ITLISGFIARLLAIYFEWGLPVFDYQE 206 >STM3738 [S] COG2860 Predicted membrane protein Sty Salmonella typhimurium LT2 Length = 205 Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 90/183 (49%), Positives = 124/183 (67%), Gaps = 1/183 (0%) Query: 1 MLLHTIYLIAICAEAISGALMGIRKDMDIFGVCLIGTVAALGGGTVRDILIGHYPLGWVA 60 MLLH +YLI I AEA++GAL R+ MD FGV +I T A+GGG+VRDIL+GHYPLGWV Sbjct: 1 MLLHVLYLIGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGGSVRDILLGHYPLGWVK 60 Query: 61 HPEYLAFTICAAVVAAVAARALHHFKSAFLVVDALGLVAFTVIGCDIARGFADFHPAIVV 120 HPEY+ AAV+ + A + + + FLV+DALGLV F++IG IA + P I V Sbjct: 61 HPEYVIIVATAAVLTTIVAPVMPYLRKLFLVLDALGLVVFSIIGAQIALDMGE-GPIIAV 119 Query: 121 MLGMVTGVFGGLLRDVLCNEIPLVLRREIYASVSLLTGATYVGVLHLQVDPRIATMSSLL 180 + + TGVFGG+LRD+ C IPLV ++E+YA +S + Y+ + H ++P + +S+LL Sbjct: 120 VAAVTTGVFGGVLRDMFCKRIPLVFQKELYAGISFASAVLYIALQHYVMNPDVVVISTLL 179 Query: 181 LGF 183 GF Sbjct: 180 FGF 182 >VC2115 [S] COG2860 Predicted membrane protein Vch Vibrio cholerae Length = 207 Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 94/197 (47%), Positives = 134/197 (68%), Gaps = 1/197 (0%) Query: 1 MLLHTIYLIAICAEAISGALMGIRKDMDIFGVCLIGTVAALGGGTVRDILIGHYPLGWVA 60 MLL +Y+I I AEA++GAL R+ MD FGV L+ + A+GGGTVRDIL+GHYPLGWV Sbjct: 1 MLLSVLYIIGITAEAMTGALSAGRRKMDWFGVMLVASATAIGGGTVRDILLGHYPLGWVK 60 Query: 61 HPEYLAFTICAAVVAAVAARALHHFKSAFLVVDALGLVAFTVIGCDIARGFADFHPAIVV 120 +PEYLA T A V+ + + K F+ +DALGL+ F++IG +A HP I + Sbjct: 61 NPEYLAITCVAGVLTTWVYKWVIKLKGLFIRLDALGLIVFSIIGTQVAMRMG-LHPGICL 119 Query: 121 MLGMVTGVFGGLLRDVLCNEIPLVLRREIYASVSLLTGATYVGVLHLQVDPRIATMSSLL 180 + +VTGVFGGLLRD++C + PLVL E+YAS++LL Y+ +L V ++T+ +L+ Sbjct: 120 VSAVVTGVFGGLLRDLICRQPPLVLHEELYASIALLASGLYLALLEFGVSDVVSTVVTLV 179 Query: 181 LGFAVRLLAIRFHWELP 197 +G+ +R+ A+RF W LP Sbjct: 180 VGYTLRMAAVRFKWRLP 196