BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0026.p (292 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value perR [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 171 1e-42 SMc00275 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 158 2e-38 CC1117 Non COG 154 3e-37 RSc0325 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 152 1e-36 AGl895 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 151 1e-36 >perR [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 297 Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 102/246 (41%), Positives = 134/246 (54%), Gaps = 7/246 (2%) Query: 4 PLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELTPAG 63 PL L AFEA R +F LAA+EL L+PSAISH + +LE LL +RLF+RST+ + LT G Sbjct: 8 PLNLLRAFEAAGRTGAFALAASELELSPSAISHAIRKLENLLDVRLFQRSTREITLTKEG 67 Query: 64 QSYLNRVAGALGAINSATDDLRHGVENSLQIHSSPSFASLWLMPRIGRFTQRHPDIALGL 123 + L + + + L++H++PSFA WL+PR+G+F + +P I L L Sbjct: 68 EILLEHIQRGFNELQQGLALVTADESRPLRLHTAPSFAHQWLLPRLGKFIRENPSIDLRL 127 Query: 124 SASPEISDFEIGQVDLDIRCGVPHWPDLEIEAVLSERVIPMASPDFLARHRIDTPDDLVL 183 SAS E + FE DLDI G P E + E + P+ SP R+ P+DL Sbjct: 128 SASTEYARFEQDDFDLDIVYGEPRPSPYEKIPLAVEELTPLCSPQL--AERLKKPEDLYA 185 Query: 184 APLIQSRGSLLQWPEWFA--RYAPDLRPERIALRFDRAMMSIEAAVQGLGVVFESDAFGA 241 LIQ L QW WF + P P LRFDR+ M+I AAV GLGVV ES Sbjct: 186 LTLIQCDVQLYQWKGWFEANKMTP---PNNYGLRFDRSFMAIAAAVDGLGVVLESKLLAE 242 Query: 242 VALASG 247 +ASG Sbjct: 243 REIASG 248 >SMc00275 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 324 Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 98/251 (39%), Positives = 135/251 (53%), Gaps = 6/251 (2%) Query: 3 PPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELTPA 62 P L SL FEA+AR +LAAAEL ++ +A+S Q+ +LE+ G+RLF R + + LT Sbjct: 5 PNLNSLAYFEAVARTGRVSLAAAELGVSAAAVSQQLKQLEEQWGVRLFRRKDRRLSLTID 64 Query: 63 GQSYLNRVAGALGAINSA-TDDLRHGVENSLQIHSSPSFASLWLMPRIGRFTQRHPDIAL 121 G+ A I A + LR L + SSPSFA WL PR+ F +PD + Sbjct: 65 GELLFQTTTSAFRMIRDARSAVLRQRNSRQLTMRSSPSFAVRWLTPRLKSFLDANPDWGV 124 Query: 122 GLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEAVLSERVIPMASPDFLARHRIDTPDDL 181 + A+P+ SDFE +DLD+R G W L E ++S+ V+PM SPD+ R R DD Sbjct: 125 RVDATPDFSDFETEVIDLDLRYGSGAWEGLRTECIISDFVLPMCSPDYRDRLR-SVSDDP 183 Query: 182 VL----APLIQSRGSLLQWPEWFARYAPDLRPERIALRFDRAMMSIEAAVQGLGVVFESD 237 VL A LI S +L QW W + D E+ LRFDR+ M+I+ A G G+V +S Sbjct: 184 VLQFAQARLIHSVKALYQWDVWLVVHNIDPPTEQAPLRFDRSSMAIQLARDGAGIVLDSA 243 Query: 238 AFGAVALASGA 248 L G+ Sbjct: 244 TLAQEELERGS 254 >CC1117 Non COG Length = 340 Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 95/258 (36%), Positives = 141/258 (54%), Gaps = 18/258 (6%) Query: 2 IPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELTP 61 +PPL +L AFEA AR +F+ AA EL +TP A+S Q+ LE +G LF+R+ KG+ LT Sbjct: 32 LPPLNALRAFEAAARHLNFSRAADELSVTPGAVSQQIQNLEDYVGAALFKRTPKGLLLTD 91 Query: 62 AGQSYL-------NRVAGALGAINSATDDLRHGVENSLQIHSSPSFASLWLMPRIGRFTQ 114 A Q+ L +R+A A + +A D R L + ++PSFA+ WL+PR+G+F Q Sbjct: 92 AAQTALPALREAFDRLAEAASLLTAAVDGRR------LTLTAAPSFAAKWLVPRLGKFEQ 145 Query: 115 RHPDIALGLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEAVLSERVIPMASPDFLARHR 174 HP + + LSA E+ DF G+VD+ IR G +P LE+ +L E V+P+ASP+ L ++ Sbjct: 146 AHPQVDVWLSAGMEVVDFATGEVDMAIRYGSGRYPGLEVIRLLHETVVPVASPELLEQNA 205 Query: 175 IDTPDDLVLAPLIQ-----SRGSLLQWPEWFARYAPDLRPERIALRFDRAMMSIEAAVQG 229 ++ P+DL L+ + S W W A RF+++ + IEAA G Sbjct: 206 LERPEDLQHHILLHDGSPDADDSCPDWAMWLAARGIRGVDGARGPRFNQSSLVIEAAANG 265 Query: 230 LGVVFESDAFGAVALASG 247 G+ L SG Sbjct: 266 RGIALAKRTLAQADLDSG 283 >RSc0325 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 320 Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/200 (43%), Positives = 120/200 (60%), Gaps = 3/200 (1%) Query: 2 IPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELTP 61 +PPL +L FEA AR +SF+ AA EL +T A+SHQ+ LE+ LG+ LFER K V LT Sbjct: 10 LPPLGALRVFEAAARYESFSRAAIELFVTHGAVSHQMRTLEEELGVPLFERRGKRVTLTH 69 Query: 62 AGQSYLNRVAGALGAINSATDDLRHGV-ENSLQIHSSPSFASLWLMPRIGRFTQRHPDIA 120 AG++Y RV AL I AT LR G +N L I + PSFA+ WL P IG F +RHP++ Sbjct: 70 AGRTYAERVRDALDQIAQATHQLRAGNRDNRLTISTMPSFAARWLTPHIGTFIERHPELE 129 Query: 121 LGLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEAVLSERVIPMASPDFLARHRIDTPDD 180 + L +SP + DF +VD+ +R G ++P L +E +L + P+ SP F TP + Sbjct: 130 VELFSSPALVDFAREEVDVALRMGSGNYPGLYVETLLDDVFFPICSPTFNGGRLPRTPAE 189 Query: 181 LVLAPLIQSRGSLLQWPEWF 200 + L++S G QW WF Sbjct: 190 MAGMTLLRSEGE--QWKPWF 207 >AGl895 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 306 Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/235 (37%), Positives = 128/235 (54%), Gaps = 6/235 (2%) Query: 1 MIPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELT 60 ++P ++L AF+++AR SF+ AA EL LT AIS QV LE+ LG+RLFER +GV LT Sbjct: 8 LLPSTSALAAFDSVARLGSFSAAADELALTQGAISRQVMSLEEQLGVRLFERGARGVSLT 67 Query: 61 PAGQSYLNRVAGALGAINSATDDL---RHGVENSLQIHSSPSFASLWLMPRIGRFTQRHP 117 G +Y +A ALG I SA+ + HG N+L + P+F + WL+PRI F HP Sbjct: 68 TEGSAYAKSIAAALGEIRSASLQIMTKTHG--NTLNLAMLPTFGTRWLLPRIPDFVANHP 125 Query: 118 DIALGLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEAVLSERVIPMASPDFLARHRIDT 177 +I + + DFE Q+D+ I G WP E ++ E V P+ SP FL+ H ++ Sbjct: 126 EITINFATRIGQFDFEREQLDMAIHIGQADWPGAESTFLMHEMVAPVCSPQFLSAHPVEK 185 Query: 178 PDDLVLAPLIQSRGSLLQWPEWFARYAPDLRPERIALRFDRAMMSIEAAVQGLGV 232 +D+ PL+ W WF L + +RF++ +A + GLGV Sbjct: 186 GEDIAALPLLHMASRPGAWGHWFESLGLSLALPQ-GMRFEQFSSVAQACIAGLGV 239