BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0023.p         (180 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM2436 [KE] COG1167 Transcriptional regulators containing a DNA...   168   7e-42

>STM2436 [KE] COG1167 Transcriptional regulators containing a DNA-binding
           HTH domain and an aminotransferase domain (MocR family)
           and their eukaryotic orthologs Sty Salmonella
           typhimurium LT2
          Length = 430

 Score =  168 bits (425), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 88/180 (48%), Positives = 118/180 (65%), Gaps = 1/180 (0%)

Query: 1   VDDHFSLVSTARYHSVIPAAAPRWALVRSFSKALGPDLRVAAVASDAATSQLLRTRLSPG 60
           +DDHF+L+S++ +  VI      WA++RS SK LGPDLR+A VASD+ATS  LR RL+ G
Sbjct: 251 IDDHFALLSSSPWQPVIAQTTQHWAVIRSVSKTLGPDLRLAIVASDSATSAKLRLRLNAG 310

Query: 61  GSWVSHFLQDSIESALGRPDTAWLMQQARADYAARRERLERALHKQGIACATGGDGLNLW 120
             WVSH LQD + + L  P+    + Q R  YAAR+++L RAL + GIA +  GDG+N W
Sbjct: 311 SQWVSHLLQDLVYACLTDPEYQHRLTQTRLFYAARQQKLARALQQYGIAISP-GDGVNAW 369

Query: 121 IALSGDDQAAALSMARLGWLLRHGEAFSVQQRVHGLRITLSALEADAAAKLAADLRRSLS 180
           + L    QA A ++A+ GWL+R GEAF V    HGLRITLS L       LAAD+ ++L+
Sbjct: 370 LPLDTHSQATAFTLAKSGWLVREGEAFGVSAPSHGLRITLSTLNDSEINTLAADIHQALN 429