BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0019.p         (70 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMB0838 [K] COG1278 Cold shock proteins Nme Neisseria meningitid...    94   6e-20
NMA1047 [K] COG1278 Cold shock proteins NmA Neisseria meningitid...    94   7e-20
RSp1053 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum     92   4e-19
RSc2466 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum     91   6e-19
RSp0002 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum     89   2e-18

>NMB0838 [K] COG1278 Cold shock proteins Nme Neisseria meningitidis MC58
          Length = 67

 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 50/63 (79%)

Query: 5  TGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKGEKAT 64
          TG+VKWFNDAKGFGFITPD GG D+FAHF  I   GF++L E QRVSFD   GPKG++A 
Sbjct: 3  TGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKTLKEGQRVSFDVTTGPKGKQAA 62

Query: 65 NIK 67
          NI+
Sbjct: 63 NIQ 65


>NMA1047 [K] COG1278 Cold shock proteins NmA Neisseria meningitidis Z2491
          Length = 67

 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 50/63 (79%)

Query: 5  TGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKGEKAT 64
          TG+VKWFNDAKGFGFITPD GG D+FAHF  I   GF++L E QRVSFD   GPKG++A 
Sbjct: 3  TGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMDGFKTLKEGQRVSFDVTTGPKGKQAA 62

Query: 65 NIK 67
          NI+
Sbjct: 63 NIQ 65


>RSp1053 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum
          Length = 67

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 50/64 (78%)

Query: 5  TGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKGEKAT 64
          TG VKWFNDAKGFGFITPD GG D+FAHF  I   GF++L E QRVSF+   GPKG++A+
Sbjct: 3  TGTVKWFNDAKGFGFITPDEGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQGPKGKQAS 62

Query: 65 NIKV 68
          NI+ 
Sbjct: 63 NIQA 66


>RSc2466 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum
          Length = 67

 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 50/63 (79%)

Query: 6  GVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKGEKATN 65
          G VKWFNDAKGFGFI+PD GG ++FAHF  IQ  GF++L E QRV+FD   GPKG++ATN
Sbjct: 4  GTVKWFNDAKGFGFISPDEGGEELFAHFSAIQMNGFKTLKEGQRVAFDVTQGPKGKQATN 63

Query: 66 IKV 68
          I+ 
Sbjct: 64 IQA 66


>RSp0002 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum
          Length = 67

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 51/63 (80%)

Query: 5  TGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKGEKAT 64
          TG VKWFN+ KGFGFITPD GGAD+FAHF +IQ +GF++L + Q+VSF+   GPKG +A+
Sbjct: 3  TGTVKWFNETKGFGFITPDGGGADLFAHFSEIQGSGFKTLKDGQKVSFEVKQGPKGLQAS 62

Query: 65 NIK 67
           IK
Sbjct: 63 GIK 65