BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0013.p (570 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3025 [L] COG0514 Superfamily II DNA helicase Rso Ralstonia so... 738 0.0 XF1381 [L] COG0514 Superfamily II DNA helicase Xfa Xylella fasti... 662 0.0 DR1289 [L] COG0514 Superfamily II DNA helicase Dra Deinococcus r... 654 0.0 PA3344 [L] COG0514 Superfamily II DNA helicase Pae Pseudomonas a... 650 0.0 NMB0274 [L] COG0514 Superfamily II DNA helicase Nme Neisseria me... 646 0.0 >RSc3025 [L] COG0514 Superfamily II DNA helicase Rso Ralstonia solanacearum Length = 637 Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/579 (63%), Positives = 440/579 (75%), Gaps = 16/579 (2%) Query: 1 VLMPTGGGKSLCYQVPALLR----QGTGVVISPLIALMQDQVDALDEVGVRAAFLNSTQS 56 VLMPTGGGKSLCYQ+PAL+R QG G+V+SPLIALMQDQV AL+E GVRAA+LNS S Sbjct: 54 VLMPTGGGKSLCYQIPALVRHRRGQGAGIVVSPLIALMQDQVAALEEAGVRAAYLNSALS 113 Query: 57 FDEAMQIERRLRQGDLDLLYVAPERLMTPRCLDLLESARISLFAIDEAHCVSQWGHDFRP 116 EA Q+ER L G LDL+YVAPERLMTPR L+LLE +RI LFAIDEAHCVSQWGHDFRP Sbjct: 114 GAEAAQVERDLAAGRLDLVYVAPERLMTPRFLELLERSRIGLFAIDEAHCVSQWGHDFRP 173 Query: 117 EYIKLSVLHERFPQVPRIALTATADQQTREEIIHRLQLEDARQFVSSFDRPNIRYQIVEK 176 EYI+LSVLHERFP VPRIALTATAD TR+EI+ RL L AR F+SSFDRPNIRY IVEK Sbjct: 174 EYIQLSVLHERFPHVPRIALTATADAVTRDEIVERLALGGARVFLSSFDRPNIRYTIVEK 233 Query: 177 ANGRKQLLDFIKSEHPE----DAGIVYCLSRKKVEETADFLRSEGINALAYHAGMDYAQR 232 + R+QLL FI++EH DAGI+YCLSRKKVEETA +L +G+ AL YHAGMD R Sbjct: 234 DSARQQLLRFIRAEHLGEDGCDAGIIYCLSRKKVEETAQWLAEQGLRALPYHAGMDAETR 293 Query: 233 TANQARFLREDKIVMVATIAFGMGIDKPDVRFVCHLDLPKSVEGYYQETGRAGRDGLPAD 292 +QA F +E+ +VMVATIAFGMGIDKPDVRFV HLDLPKS+EGYYQETGRAGRDGLPA+ Sbjct: 294 ARHQAIFRKEEGVVMVATIAFGMGIDKPDVRFVAHLDLPKSLEGYYQETGRAGRDGLPAN 353 Query: 293 AWMAYGLQDVVQQRRMIDESDADETFKRVLGTKLNAMLALCETLHCRRVHLLDYFGEKSA 352 AWMAYGL DVVQQRRMIDESDAD+ KRV KL+A+L LCE+ CRRV LL YFGE S Sbjct: 354 AWMAYGLADVVQQRRMIDESDADDVHKRVSTAKLDALLGLCESAGCRRVALLAYFGESSE 413 Query: 353 PCGNCDTCLTPPVSFDATVEVQKLLSTVYRVEQ----RFAPGHVIEVLRGIDGERVKQWR 408 PCGNCDTCL+PP ++DAT E Q LS VYRV+Q F G +I++LRG ER+KQW Sbjct: 414 PCGNCDTCLSPPQTWDATREAQMALSCVYRVQQASRVSFGAGQLIDILRGNATERIKQWH 473 Query: 409 HDQLSVFGVGSDRGEAEWRAILRQVIALGLLTVDADNYSALKLTEAARPVLRGEQAVQLR 468 H+ LS FG+G+ E WR + RQ++A GLL VD + AL LT+AARPVL+G Q V LR Sbjct: 474 HETLSTFGIGNALSERAWRGVFRQLVAQGLLAVDHGGHGALVLTDAARPVLKGAQHVTLR 533 Query: 469 RYQKPEKAKRS----SQRSSFVETDLSTEEQALFEKLRWWRVETARAHNVPAYVIFHDAT 524 R + +A + S+R + +LS E Q ++ LR WR +TAR H+VPAYVIFHDAT Sbjct: 534 RQAEKVRAAPASGAKSERRADPAAELSAEAQVRWQALRVWRAQTAREHSVPAYVIFHDAT 593 Query: 525 MREIAKARPQSLDDLRHVTGVGEKKLETYGAQIIALIAE 563 + IA++ P S D L + G+G KL+ YG ++ ++A+ Sbjct: 594 LARIAESDPASRDALAELPGIGVAKLDRYGQALLDVLAK 632 >XF1381 [L] COG0514 Superfamily II DNA helicase Xfa Xylella fastidiosa 9a5c Length = 645 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/562 (58%), Positives = 408/562 (72%), Gaps = 5/562 (0%) Query: 1 VLMPTGGGKSLCYQVPALLRQGTGVVISPLIALMQDQVDALDEVGVRAAFLNSTQSFDEA 60 VLMPTGGGKSLCYQVPALLR+G GVVISPLIALMQDQV+ L ++GVRAA+LNST +A Sbjct: 84 VLMPTGGGKSLCYQVPALLRKGIGVVISPLIALMQDQVETLRQLGVRAAYLNSTLDATQA 143 Query: 61 MQIERRLRQGDLDLLYVAPERLMTPRCLDLLESARISLFAIDEAHCVSQWGHDFRPEYIK 120 +IE L DLDLLY+APERL+T L LLE ++I+LFAIDEAHCVSQWGHDFRPEY + Sbjct: 144 QRIEHALVTADLDLLYIAPERLLTAHFLSLLERSQIALFAIDEAHCVSQWGHDFRPEYRQ 203 Query: 121 LSVLHERFPQVPRIALTATADQQTREEIIHRLQLEDARQFVSSFDRPNIRYQIVEKANGR 180 L+VLHER+P VPRIALTATAD T+ EI RL L DA F+SSFDRPNIRY +V+K N R Sbjct: 204 LTVLHERWPHVPRIALTATADPPTQREIAERLDLSDAHHFISSFDRPNIRYTVVQKNNMR 263 Query: 181 KQLLDFIKSEHPEDAGIVYCLSRKKVEETADFLRSEGINALAYHAGMDYAQRTANQARFL 240 +QL +F+ H AGIVY +SR+K EE A +L ++G NAL YHAG+ R +Q FL Sbjct: 264 RQLQEFL-GRHRNTAGIVYAMSRRKTEEIAAYLCTQGYNALPYHAGLPVETRAKHQRCFL 322 Query: 241 REDKIVMVATIAFGMGIDKPDVRFVCHLDLPKSVEGYYQETGRAGRDGLPADAWMAYGLQ 300 RE+ IVM ATIAFGMGI+KPDVRFV H+DLPKS+EGYYQETGRAGRDG A+AWM Y L Sbjct: 323 REEGIVMCATIAFGMGINKPDVRFVAHIDLPKSLEGYYQETGRAGRDGEAAEAWMCYSLG 382 Query: 301 DVVQQRRMIDESDADETFKRVLGTKLNAMLALCETLHCRRVHLLDYFGEK-SAPCGNCDT 359 DVV ++MI++S+A E K V KL+ +L CE++ CRR LL FGE PCGNCD Sbjct: 383 DVVLLKQMIEQSEASEARKCVERAKLDHLLGYCESMQCRRQLLLSSFGETYPNPCGNCDN 442 Query: 360 CLTPPVSFDATVEVQKLLSTVYRVEQRFAPGHVIEVLRGIDGERVKQWRHDQLSVFGVGS 419 CLTP ++DATV QK LS VYR QRF GH+I++LRG +R+ Q HDQLS +G+GS Sbjct: 443 CLTPATAWDATVLSQKALSCVYRTGQRFGVGHLIDILRGSKSQRILQLGHDQLSTYGIGS 502 Query: 420 DRGEAEWRAILRQVIALGLLTVDADNYSALKLTEAARPVLRGEQAVQLRRYQKPEKAKRS 479 D E WR++ RQ++A LL VD + Y L+LT ++RPVL+GE+ V +RR Q + R+ Sbjct: 503 DVDERSWRSVFRQLVATHLLEVDNEGYGGLRLTPSSRPVLKGERQVMMRRDQFIRERDRT 562 Query: 480 SQRSSFVETDLSTEEQALFEKLRWWRVETARAHNVPAYVIFHDATMREIAKARPQSLDDL 539 QR + E+ ALF L R + A+ NVPA+VIFHD+T+R IA+ RP +L+ L Sbjct: 563 GQRHGL---SVLPEDLALFNALHRLRAQLAKEQNVPAFVIFHDSTLRHIAEQRPTNLNAL 619 Query: 540 RHVTGVGEKKLETYGAQIIALI 561 ++G+G KL YG Q+I L+ Sbjct: 620 TKISGIGNNKLTRYGHQLIELV 641 >DR1289 [L] COG0514 Superfamily II DNA helicase Dra Deinococcus radiodurans Length = 824 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/563 (57%), Positives = 409/563 (72%), Gaps = 4/563 (0%) Query: 1 VLMPTGGGKSLCYQVPALLRQGTGVVISPLIALMQDQVDALDEVGVRAAFLNSTQSFDEA 60 VLMPTGGGKSLCYQ+P+LLR GTG+V+SPLIALM+DQVD L + GVRAAFLNST EA Sbjct: 44 VLMPTGGGKSLCYQLPSLLRPGTGIVVSPLIALMKDQVDTLRQNGVRAAFLNSTLLPHEA 103 Query: 61 MQIERRLRQGDLDLLYVAPERLMTPRCLDLLESARISLFAIDEAHCVSQWGHDFRPEYIK 120 ++E L +GDLDLLYVAPERL+ PR LDLLE A ++LFAIDEAHCVSQWGHDFRPEY + Sbjct: 104 REVEDALLRGDLDLLYVAPERLLMPRTLDLLERAPVALFAIDEAHCVSQWGHDFRPEYQQ 163 Query: 121 LSVLHERFPQVPRIALTATADQQTREEIIHRLQLEDARQFVSSFDRPNIRYQIVEKANGR 180 LSVL ERFP++PR+ALTATAD++TR +I L+LEDA QFVSSFDRPNI+Y++ K + + Sbjct: 164 LSVLAERFPELPRVALTATADERTRADIKSVLRLEDAPQFVSSFDRPNIQYRVGLKDSPK 223 Query: 181 KQLLDFIKSEHPEDAGIVYCLSRKKVEETADFLRSEGINALAYHAGMDYAQRTANQARFL 240 QLL FI+ EHP DAGIVYCLSRK VEETA +L+++GI+ALAYHAG+ +R Q RFL Sbjct: 224 TQLLHFIREEHPGDAGIVYCLSRKSVEETAKWLQAQGIDALAYHAGLSSTERNNVQERFL 283 Query: 241 REDKIVMVATIAFGMGIDKPDVRFVCHLDLPKSVEGYYQETGRAGRDGLPADAWMAYGLQ 300 E+ +++ AT+AFGMGIDKP+VRFV HLDLPKS+EGYYQETGRAGRDGLP+ AWM YGL Sbjct: 284 NEEGVIVCATVAFGMGIDKPNVRFVAHLDLPKSMEGYYQETGRAGRDGLPSTAWMVYGLS 343 Query: 301 DVVQQRRMIDESDADETFKRVLGTKLNAMLALCETLHCRRVHLLDYFGEK-SAPCGNCDT 359 DVV RRM+ +SDA E KRV +KL+A+L CE CRR LL YFGE+ S PCGNCD Sbjct: 344 DVVNVRRMLAQSDAPEEVKRVEASKLDALLTYCEAATCRRQVLLHYFGEELSEPCGNCDV 403 Query: 360 CLTPPVSFDATVEVQKLLSTVYRVEQRFAPGHVIEVLRGIDGERVKQWRHDQLSVFGVGS 419 CL PP D T E Q LS R RF H+ +VL G + ++V H QL FGVG Sbjct: 404 CLNPPRVRDLTREAQMALSATIRTGNRFGAAHLTDVLLGRETDKVLAQGHHQLPTFGVGK 463 Query: 420 DRGEAEWRAILRQVIALGLLTVDADNYSALKLTEAARPVLRGEQAVQLRR-YQKPEKAKR 478 + E WR++LRQ+++LG L+ AD++ L+ T +R +L+ Q + LR P K Sbjct: 464 EHDEKLWRSVLRQLVSLGYLS--ADDHFGLRATGKSRGILKEGQKLLLREDTLLPGAGKS 521 Query: 479 SSQRSSFVETDLSTEEQALFEKLRWWRVETARAHNVPAYVIFHDATMREIAKARPQSLDD 538 R+S L + + LFE LR WR++ A+ ++P Y IFHDAT++ IA+ RP S Sbjct: 522 KRDRASASRAALDSHDAPLFEALRAWRLQKAKELSLPPYTIFHDATLKTIAELRPGSHAT 581 Query: 539 LRHVTGVGEKKLETYGAQIIALI 561 L V+GVG +KL YG +++ ++ Sbjct: 582 LGTVSGVGGRKLAAYGDEVLQVV 604 >PA3344 [L] COG0514 Superfamily II DNA helicase Pae Pseudomonas aeruginosa Length = 712 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/565 (57%), Positives = 416/565 (73%), Gaps = 3/565 (0%) Query: 1 VLMPTGGGKSLCYQVPALLRQGTGVVISPLIALMQDQVDALDEVGVRAAFLNSTQSFDEA 60 VLMPTGGGKSLC+QVPALLR+G VV+SPLIALM+DQV LDE+GV A LNST + ++ Sbjct: 37 VLMPTGGGKSLCFQVPALLREGLTVVVSPLIALMEDQVATLDELGVPAVALNSTLNPEQQ 96 Query: 61 MQIERRLRQGDLDLLYVAPERLMTPRCLDLLESARISLFAIDEAHCVSQWGHDFRPEYIK 120 I RL++G++ LLY+APERL+ PR L L+ + LFAIDEAHCVSQWGHDFRPEY++ Sbjct: 97 RDIAERLQRGEIKLLYLAPERLVQPRMLAFLQRLPVGLFAIDEAHCVSQWGHDFRPEYLQ 156 Query: 121 LSVLHERFPQVPRIALTATADQQTREEIIHRLQLEDARQFVSSFDRPNIRYQIVEKANGR 180 L L E FPQVPRIALTATAD +TREE+I RL L++A QF+SSFDRPNI Y+IV K R Sbjct: 157 LGQLAELFPQVPRIALTATADMRTREEMIQRLHLQNAEQFLSSFDRPNIFYRIVPKEQPR 216 Query: 181 KQLLDFIKSEHPEDAGIVYCLSRKKVEETADFLRSEGINALAYHAGMDYAQRTANQARFL 240 KQLL F+ SE DAGIVYCLSRKKVEE A+FL ++G AL YHAG+ R +Q RFL Sbjct: 217 KQLLGFL-SERRGDAGIVYCLSRKKVEEVAEFLGNQGFPALPYHAGLSNELRAHHQKRFL 275 Query: 241 REDKIVMVATIAFGMGIDKPDVRFVCHLDLPKSVEGYYQETGRAGRDGLPADAWMAYGLQ 300 E+ ++MVATIAFGMGIDKP+VRFV HLDLPKS+E YYQETGRAGRDGLPADAWMAYGLQ Sbjct: 276 NEEGLIMVATIAFGMGIDKPNVRFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQ 335 Query: 301 DVVQQRRMIDESDADETFKRVLGTKLNAMLALCETLHCRRVHLLDYFGEK-SAPCGNCDT 359 DV+ R+M+ S+ DE KRV KL AMLALCE CRR LL YF E+ PCG+CD Sbjct: 336 DVLLLRQMMQSSEGDERHKRVERHKLEAMLALCEETRCRRQALLAYFDEEMPQPCGHCDN 395 Query: 360 CLTPPVSFDATVEVQKLLSTVYRVEQRFAPGHVIEVLRGIDGERVKQWRHDQLSVFGVGS 419 C+ ++DAT ++ LS +YR QR+ GH++++L G + E+++ H L+VFG+G Sbjct: 396 CVDGVETWDATESARQALSAIYRSGQRYGVGHLVDILLGRETEKIRSLGHQHLAVFGIGK 455 Query: 420 DRGEAEWRAILRQVIALGLLTVDADNYSALKLTEAARPVLRGEQAVQLRRYQKPEKAKRS 479 RGE EWR + RQ++A GL VD D + L+LTEA RP+LRGE ++LRR KP++AK S Sbjct: 456 GRGEDEWRTLFRQLVARGLADVDLDGFGGLRLTEACRPLLRGEVRLELRRDLKPQRAKGS 515 Query: 480 SQRSSFVETDL-STEEQALFEKLRWWRVETARAHNVPAYVIFHDATMREIAKARPQSLDD 538 S + + L +EE+ ++E LR R + A H+VP YVIF DAT+ E+ +++P+SL D Sbjct: 516 SSGGASAASQLVRSEEREMWEALRALRRKLAEEHSVPPYVIFPDATLLEMLRSQPRSLSD 575 Query: 539 LRHVTGVGEKKLETYGAQIIALIAE 563 + V+GVG +KLE YG + ++ + Sbjct: 576 MAQVSGVGARKLERYGQAFLDVLTD 600 >NMB0274 [L] COG0514 Superfamily II DNA helicase Nme Neisseria meningitidis MC58 Length = 766 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/558 (57%), Positives = 411/558 (73%), Gaps = 4/558 (0%) Query: 1 VLMPTGGGKSLCYQVPALLRQGTGVVISPLIALMQDQVDALDEVGVRAAFLNSTQSFDEA 60 VLMPTGGGKSLCYQ+PAL+R+G VV+SPLIALM DQV L G+ AA +NS S DEA Sbjct: 38 VLMPTGGGKSLCYQIPALMREGVAVVVSPLIALMNDQVANLHAAGIEAAAVNSGTSADEA 97 Query: 61 MQIERRLRQGDLDLLYVAPERLMTPRCLDLLESARISLFAIDEAHCVSQWGHDFRPEYIK 120 +I RL QG L LLYVAPERL+T R L L+ +SLFAIDEAHCVSQWGHDFRPEY + Sbjct: 98 REIADRLAQGRLKLLYVAPERLVTDRFLRFLDQQTVSLFAIDEAHCVSQWGHDFRPEYQQ 157 Query: 121 LSVLHERFPQVPRIALTATADQQTREEIIHRLQLEDARQFVSSFDRPNIRYQIVEKANGR 180 L +L ER+P VPRIALTATAD TR +I H L L+DA +FVSSFDRPNI YQ++EK NG+ Sbjct: 158 LGMLAERYPNVPRIALTATADAATRADIKHYLHLDDAPEFVSSFDRPNIYYQVIEKNNGK 217 Query: 181 KQLLDFIKSEHPEDAGIVYCLSRKKVEETADFLRSEGINALAYHAGMDYAQRTANQARFL 240 KQLLDFI+ E +GIVYCLSRKKVE+ A FLR G+NA+ YHAG+ R NQ RF Sbjct: 218 KQLLDFIRKEMTGQSGIVYCLSRKKVEDVAQFLRENGLNAIPYHAGLSMDVREENQRRFT 277 Query: 241 REDKIVMVATIAFGMGIDKPDVRFVCHLDLPKSVEGYYQETGRAGRDGLPADAWMAYGLQ 300 ED I++VAT+AFGMGIDKPDVRFV HLD+P+SVE +YQE+GRAGRDGLPA +W+ YGL Sbjct: 278 HEDNIIVVATVAFGMGIDKPDVRFVAHLDMPQSVEHFYQESGRAGRDGLPAASWLCYGLN 337 Query: 301 DVVQQRRMIDESDADETFKRVLGTKLNAMLALCETLHCRRVHLLDYFGEKSAPCGNCDTC 360 D V R I E ++DE K++ KL+AMLA+CET CRRV LL +FGE S PCG+CD C Sbjct: 338 DWVLLRERIAEGNSDEVQKQIEMQKLDAMLAVCETAACRRVLLLKHFGEASEPCGHCDNC 397 Query: 361 LTPPVSFDATVEVQKLLSTVYRVEQRFAPGHVIEVLRGIDGERVKQWRHDQLSVFGVGSD 420 L PPV FD TV VQKLLS VYR QRFA G++ +LRG + ++ RH+QLS FG+G++ Sbjct: 398 LHPPVRFDGTVLVQKLLSCVYRAGQRFAAGYITNILRGKSDDWIRGNRHEQLSTFGIGTE 457 Query: 421 RGEAEWRAILRQVIALGLLTVDADNYSALKLTEAARPVLRGEQAVQLRRYQKPEKAKRSS 480 + EWR+++RQ I+LG LTV+ Y AL+LTEAA+ VL+GE V LR ++ + A R + Sbjct: 458 LSDKEWRSVIRQCISLGYLTVNITRYQALQLTEAAKKVLKGETEVMLRPLKRDKPAAR-T 516 Query: 481 QRSSFVETDLSTEEQALFEKLRWWRVETARAHNVPAYVIFHDATMREIAKARPQSLDDLR 540 + +++ T+ E+ L++ LR WR++ A A +PAY+IF D T+R++ + PQ L+ L Sbjct: 517 LKDNWLRTE---REERLWQALRVWRMKQAEAEGIPAYMIFGDKTLRDLVEKMPQDLNGLH 573 Query: 541 HVTGVGEKKLETYGAQII 558 + G+GE K++ +G I+ Sbjct: 574 DIYGLGEAKIDRFGHGIL 591