BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0001.p (483 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0009 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 525 e-148 PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 456 e-128 CC0806 [MU] COG1538 Outer membrane protein Ccr Caulobacter vibri... 414 e-115 RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 400 e-111 NMB1714 [MU] COG1538 Outer membrane protein Nme Neisseria mening... 386 e-107 >RSc0009 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 514 Score = 525 bits (1351), Expect = e-148, Method: Compositional matrix adjust. Identities = 276/473 (58%), Positives = 342/473 (72%), Gaps = 13/473 (2%) Query: 23 GVLGGCSLAPTYERPQAPVESSYP---------ADAA--GRAELQAVNLGWRQFFPDQRL 71 GVL GCSLAP YER APV YP AD A G +A +LGWR+FFPD RL Sbjct: 21 GVLSGCSLAPRYERLAAPVAGDYPQAPAGYGVSADTAKPGETAPRATDLGWREFFPDPRL 80 Query: 72 QQLIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNLSGNAARTRTAASQSLTGQP 131 Q+LI +LENNRDLR A+LNIE ARAQY+ ADLLP +N + R+ T S S TGQ Sbjct: 81 QRLIGLSLENNRDLRVAILNIEAARAQYRQQIADLLPPINATATYTRSLTPQSISQTGQD 140 Query: 132 TISNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISLVAQVAQAYLAER 191 + YQ+G+ + Y+++ F V ++ +A ASYL+TEE Q++ QISL++QVA+AYL ER Sbjct: 141 INTKQYQLGVGISNYQVNLFS-VGDVTSSARASYLATEEGQRATQISLISQVAKAYLNER 199 Query: 192 SYAEQLKLADETLKSRQSNLDLAQKRLDVGTSTALDFRLTQTLVESARVAKTQLERQRAQ 251 +YAEQL+LA +TLK R+ LA++R DVG S+ALD R +TLVESARV+ QL RQ AQ Sbjct: 200 AYAEQLELAQQTLKGREDYYKLAKQRFDVGASSALDLRQNETLVESARVSVAQLTRQYAQ 259 Query: 252 AENALTLLVGKKI-GELPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIRSAEQSLLAANAN 310 A NAL LLVG + +LPP +S EKIV DIP GLPS+LL RPDIR AEQ L+AANAN Sbjct: 260 ATNALVLLVGSPLPADLPPPTTVSSEKIVADIPPGLPSELLEQRPDIRQAEQKLVAANAN 319 Query: 311 IGAARAAFFPRISLTGNFGSASSTLGGLFESGSGAWSFGPSLSLPIFDFGRNSANLDLAE 370 IG ARAAFFP + LT N G+AS+ L LF+SG+G WSF P+L+LPIF++G N NLDL + Sbjct: 320 IGVARAAFFPSLGLTSNVGTASTALHDLFKSGTGLWSFVPNLTLPIFNWGTNVFNLDLTK 379 Query: 371 VRKNKAVVTYEKTIQTAFREVADALVARGSLDEQVKAQEAFLAAQQERLKLTDLRFKNGI 430 + AV YEKTIQTAF+EV+DALVARG+LDEQV AQ+ F A ERL L+D R++NG+ Sbjct: 380 ANQKIAVANYEKTIQTAFQEVSDALVARGTLDEQVAAQKRFRDATAERLTLSDQRYRNGV 439 Query: 431 ASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGGLNENTVSVAAKQ 483 +S LD LDAQRDLFSA Q L+Q R RL NA+DLY ALGGGL E++ +VAA+Q Sbjct: 440 SSFLDVLDAQRDLFSADQTLVQTRLARLTNAVDLYTALGGGLQEHSTTVAAQQ 492 >PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 485 Score = 456 bits (1172), Expect = e-128, Method: Compositional matrix adjust. Identities = 242/459 (52%), Positives = 309/459 (67%), Gaps = 5/459 (1%) Query: 20 VVAGVLGGCSLAPTYERPQAPVESSYPADAA-----GRAELQAVNLGWRQFFPDQRLQQL 74 V A VL GCSL P Y+RP+APV ++YP A G A + A ++GWR+FF D +LQQL Sbjct: 10 VAAVVLSGCSLIPDYQRPEAPVAAAYPQGQAYGQNTGAAAVPAADIGWREFFRDPQLQQL 69 Query: 75 IAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNLSGNAARTRTAASQSLTGQPTIS 134 I ALENNRDLR A LN+E RAQY+I RADL P + + G+ R R S TG P IS Sbjct: 70 IGVALENNRDLRVAALNVEAFRAQYRIQRADLFPRIGVDGSGTRQRLPGDLSTTGSPAIS 129 Query: 135 NSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISLVAQVAQAYLAERSYA 194 + Y V L A+ELD FGR+R+L+D AL YL+TE+AQ+SAQ +LVA VA AYL ++ Sbjct: 130 SQYGVTLGTTAWELDLFGRLRSLRDQALEQYLATEQAQRSAQTTLVASVATAYLTLKADQ 189 Query: 195 EQLKLADETLKSRQSNLDLAQKRLDVGTSTALDFRLTQTLVESARVAKTQLERQRAQAEN 254 QL+L +TL + Q + DL Q+ DVG ++ALD R QT VE AR Q R AQ +N Sbjct: 190 AQLQLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQN 249 Query: 255 ALTLLVGKKIGELPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIRSAEQSLLAANANIGAA 314 AL LL+G I P L D+ ++T++PAGLPSDLL RPDI AE L+AANA+IGAA Sbjct: 250 ALVLLLGSGIPANLPQGLGLDQTLLTEVPAGLPSDLLQRRPDILEAEHQLMAANASIGAA 309 Query: 315 RAAFFPRISLTGNFGSASSTLGGLFESGSGAWSFGPSLSLPIFDFGRNSANLDLAEVRKN 374 RAAFFP ISLT N G+ S L GLF++GSG+W F PS++LPIF G A+LD A+++K+ Sbjct: 310 RAAFFPSISLTANAGTMSRQLSGLFDAGSGSWLFQPSINLPIFTAGSLRASLDYAKIQKD 369 Query: 375 KAVVTYEKTIQTAFREVADALVARGSLDEQVKAQEAFLAAQQERLKLTDLRFKNGIASSL 434 V YEK IQTAF+EVAD L ARG+ EQ++AQ + A E +L D R++ G+ + L Sbjct: 370 INVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQLADKRYRTGVDNYL 429 Query: 435 DQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGGLN 473 LDAQR LF+AQQ LI R +L + ++LYKALGGG N Sbjct: 430 TLLDAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGGWN 468 >CC0806 [MU] COG1538 Outer membrane protein Ccr Caulobacter vibrioides Length = 467 Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust. Identities = 229/464 (49%), Positives = 309/464 (66%), Gaps = 6/464 (1%) Query: 12 LLHMCAALVVAGVLGGCSLAPTYERPQAPVESSY--PADAAGRAELQAVNLGWRQFFPDQ 69 L + LV + +G C+LAP YERP PV ++ PA A + A +L WRQ D Sbjct: 2 LRNFTLILVASTAVGACTLAPQYERPVLPVAQTWSTPAPEAA-TTVSAADLDWRQVLVDP 60 Query: 70 RLQQLIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNLSGNAARTRTAASQSLTG 129 RLQ ++ AL+ NRDLR AVLNIE+ARAQY + R+ L P ++ + + R RT AS S TG Sbjct: 61 RLQGVVDLALQQNRDLRVAVLNIEKARAQYGVQRSALFPGVSGAVSEQRGRTPASTSPTG 120 Query: 130 QPTISNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISLVAQVAQAYLA 189 QP ++ + + AYELD FGRVR+LKDAAL SYL+TE+ +S ++SL+A++A A+L Sbjct: 121 QPFETDVFNATIGFTAYELDLFGRVRSLKDAALQSYLATEQTSRSVRVSLIAEIANAWLT 180 Query: 190 ERSYAEQLKLADETLKSRQSNLDLAQKRLDVGTSTALDFRLTQTLVESARVAKTQLERQR 249 + E+L LA TL +R+ +L L ++R+D G + LD R +TL E+AR Q Sbjct: 181 LAADQERLALAKTTLATREDSLRLVRQRVDGGAGSLLDLRNAETLAETARADVAVYTAQV 240 Query: 250 AQAENALTLLVGKK--IGELPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIRSAEQSLLAA 307 AQ NALTLL G + LPP +L +D ++ D+PAGLPSD+L RPD+ +AE+ L AA Sbjct: 241 AQDRNALTLLAGGDLPVDLLPPGRLDAD-SVLADLPAGLPSDVLARRPDVLAAERQLQAA 299 Query: 308 NANIGAARAAFFPRISLTGNFGSASSTLGGLFESGSGAWSFGPSLSLPIFDFGRNSANLD 367 NANIGAARAAFFPRISLTG+ GSAS+ L GLF+SG+ WSF P +SLPIF G N ANL+ Sbjct: 300 NANIGAARAAFFPRISLTGSAGSASTDLDGLFKSGTSIWSFTPQISLPIFAGGANVANLN 359 Query: 368 LAEVRKNKAVVTYEKTIQTAFREVADALVARGSLDEQVKAQEAFLAAQQERLKLTDLRFK 427 +++ ++ AV TYEKT+QTAFREV+DAL R ++ +++ AQE AA + +L+ R Sbjct: 360 ISKADRDIAVATYEKTVQTAFREVSDALSVRATVADRLTAQERLTAAAADSTRLSQQRRD 419 Query: 428 NGIASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGG 471 G+ S+L LDAQR L++AQQ LI AR + N + LYK LGGG Sbjct: 420 AGLDSALTLLDAQRSLYTAQQGLISARLAQATNLVTLYKTLGGG 463 >RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 491 Score = 400 bits (1028), Expect = e-111, Method: Compositional matrix adjust. Identities = 231/466 (49%), Positives = 298/466 (63%), Gaps = 20/466 (4%) Query: 27 GCSLAPTYERPQAPVE------SSYPADAAG-RAELQAVNLGWRQFFPDQRLQQLIAAAL 79 GC+L PTY++P APV S D G RA +GWR F D LQ++I AL Sbjct: 17 GCTLMPTYQQPAAPVPAAFAGASDDRGDTDGTRAATPVAEIGWRDVFTDPSLQRVIDLAL 76 Query: 80 ENNRDLRTAVLNIEEARAQYQIARADLLPNLNLSGNAARTRTAASQSLTGQPTISNSYQV 139 NNRDLR AVLN+E+ARAQY++ A L P + SG+ + +RT A+ S TGQP +S++Y Sbjct: 77 ANNRDLRVAVLNLEKARAQYRVQDAALFPTVKASGSESASRTPAALSATGQPVVSHTYSA 136 Query: 140 GLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISLVAQVAQAYLAERSYAEQLKL 199 L AYELD FGRVR+L AL YL+T EA++S+QISLVA+VA AYL + + LKL Sbjct: 137 TLGFSAYELDLFGRVRSLSAQALEQYLATVEARRSSQISLVAEVATAYLTLAADQDLLKL 196 Query: 200 ADETLKSRQSNLDLAQKRLDVGTSTALDFRLTQTLVESARVAKTQLERQRAQAENALTLL 259 A +TL S+ L Q+ ++GT++ L R +QT V++ARV + Q AQ NAL LL Sbjct: 197 AQDTLSSQSDTYRLNQRSYELGTASRLTLRQSQTSVDAARVDVERYTAQVAQDRNALVLL 256 Query: 260 VGKKIGELPPAQLL---------SDEKIVTDIPAGLPSDLLTNRPDIRSAEQSLLAANAN 310 VG + PA+LL + ++ IP GL SDLL RPDI AE L AANAN Sbjct: 257 VGADV----PAELLPRSLPDPSAASGSVLATIPPGLASDLLQRRPDILQAEHDLKAANAN 312 Query: 311 IGAARAAFFPRISLTGNFGSASSTLGGLFESGSGAWSFGPSLSLPIFDFGRNSANLDLAE 370 IGAARAAFFP ISLT + G++S++L GLF+ GSG WSFGP +SLPIFD G N ANLD+A Sbjct: 313 IGAARAAFFPSISLTASAGTSSASLAGLFKGGSGVWSFGPQISLPIFDGGANRANLDIAN 372 Query: 371 VRKNKAVVTYEKTIQTAFREVADALVARGSLDEQVKAQEAFLAAQQERLKLTDLRFKNGI 430 ++ A+ YEK IQTAFREV+DAL RG+L Q+ AQ++ + A + +L RFK G+ Sbjct: 373 ASRDIALAQYEKAIQTAFREVSDALAQRGTLGRQLDAQQSLVDATSDSYQLATARFKRGV 432 Query: 431 ASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGGLNENT 476 S L+ LD+QR L++AQQ LI R RL N YK LGGG E + Sbjct: 433 DSYLNVLDSQRSLYTAQQNLINTRLSRLTNLATFYKTLGGGWVETS 478 >NMB1714 [MU] COG1538 Outer membrane protein Nme Neisseria meningitidis MC58 Length = 467 Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust. Identities = 211/460 (45%), Positives = 293/460 (63%), Gaps = 8/460 (1%) Query: 18 ALVVAGVLGGCSLAPTYERPQAPVESSYPADAAGRAELQAVNLGWRQFFPDQRLQQLIAA 77 ++ A L C++ P YE+P+ V ++ D A ++AV+LGW +F D RLQ+LI Sbjct: 11 SVAAAFALSACTMIPQYEQPKVEVAETFKNDTADSG-IRAVDLGWHDYFADPRLQKLIDI 69 Query: 78 ALENNRDLRTAVLNIEEARAQYQIARADLLPNLNLSGNAARTRTAASQSLTGQPTISNSY 137 ALE N LRTAVLN E R QY I R +LLP L + N +R SL+G +S+SY Sbjct: 70 ALERNTSLRTAVLNSEIYRKQYMIERNNLLPTLAANANDSR-----QGSLSG-GNVSSSY 123 Query: 138 QVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISLVAQVAQAYLAERSYAEQL 197 +VGL +YELD FGRVR+ +AAL Y ++ + +A +SL+A VA+AY ER E + Sbjct: 124 KVGLGAASYELDLFGRVRSSSEAALQGYFASTANRDAAHLSLIATVAKAYFNERYAEEAM 183 Query: 198 KLADETLKSRQSNLDLAQKRLDVGTSTALDFRLTQTLVESARVAKTQLERQRAQAENALT 257 LA LK+R+ L++ R G +A+ R + L+ESA+ R R QA NAL Sbjct: 184 SLAQRVLKTREETYKLSELRYKAGVISAVALRQQEALIESAKADYAHAARSREQARNALA 243 Query: 258 LLVGKKIGELPPAQLLSDEKI-VTDIPAGLPSDLLTNRPDIRSAEQSLLAANANIGAARA 316 L+ + I E PA L D++ V +PAGL S++L +RPDIR+AE +L ANANIGAARA Sbjct: 244 TLINQPIPEDLPAGLPLDKQFFVEKLPAGLSSEVLLDRPDIRAAEHALKQANANIGAARA 303 Query: 317 AFFPRISLTGNFGSASSTLGGLFESGSGAWSFGPSLSLPIFDFGRNSANLDLAEVRKNKA 376 AFFP I LTG G+ S+ LGGLF+SG+G WSF PS++LPIF +G N ANLD+A++R+ Sbjct: 304 AFFPSIRLTGTVGTGSAELGGLFKSGTGVWSFAPSITLPIFTWGTNKANLDVAKLRQQVQ 363 Query: 377 VVTYEKTIQTAFREVADALVARGSLDEQVKAQEAFLAAQQERLKLTDLRFKNGIASSLDQ 436 +V YE +Q+AF++VA+AL AR LD+ A A +E L+L LR+K+G++ +LD Sbjct: 364 IVAYESAVQSAFQDVANALAAREQLDKAYDALSKQSRASKEALRLVGLRYKHGVSGALDL 423 Query: 437 LDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGGLNENT 476 LDA+R ++A+ A + A+ R N DLYKALGGGL +T Sbjct: 424 LDAERSSYAAEGAALSAQLTRAENLADLYKALGGGLKRDT 463