BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0014.p         (166 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1098 [R] COG1853 Conserved protein/domain typically associate...   164   9e-41
PA4092 [R] COG1853 Conserved protein/domain typically associated...   162   4e-40
YPO1770 [R] COG1853 Conserved protein/domain typically associate...   157   1e-38
NMB1842 [R] COG1853 Conserved protein/domain typically associate...   145   3e-35
NMA0614 [R] COG1853 Conserved protein/domain typically associate...   145   3e-35

>STM1098 [R] COG1853 Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family Sty Salmonella
           typhimurium LT2
          Length = 170

 Score =  164 bits (414), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 89/162 (54%), Positives = 108/162 (66%), Gaps = 3/162 (1%)

Query: 5   FRDAMARLSAAVNIITTDGPAGRAAMTVSAVSSVSDEPATVLVCINVSSAAHPILVGNGR 64
           FRDAMA L+AAVNI+TT G AGR  +T +AV SV+D P +V+VCIN +SA +P+  GNGR
Sbjct: 10  FRDAMASLAAAVNIVTTAGHAGRCGITATAVCSVTDTPPSVMVCINANSAMNPVFQGNGR 69

Query: 65  LCINILAAHHEDVARIIAGMTGLAAEERMAQVRWEMGDYGQPVLPDALAVLEGDIVLQQQ 124
           LCIN+L    E +AR  AGMTG+A EER  Q  W+ G  GQPVL  ALA LEG+I   Q 
Sbjct: 70  LCINVLNHEQELMARHFAGMTGMAMEERFHQPCWQNGPLGQPVLNGALAGLEGEISEVQT 129

Query: 125 AGTHSVLFVEIRHIRLAAAQADGLAYFGRRFH--RIAAGVPV 164
            GTH V  V I++I L +    GL YF RRFH  R+    PV
Sbjct: 130 IGTHLVYLVAIKNIIL-SQDGHGLIYFKRRFHPVRLEMEAPV 170


>PA4092 [R] COG1853 Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family Pae
           Pseudomonas aeruginosa
          Length = 170

 Score =  162 bits (409), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 81/157 (51%), Positives = 107/157 (68%), Gaps = 1/157 (0%)

Query: 2   KQDFRDAMARLSAAVNIITTDGPAGRAAMTVSAVSSVSDEPATVLVCINVSSAAHPILVG 61
           +Q FR+AMA LSAAVN+IT++GPAGR  +T +AV SV+D P T+++CIN +S  + +   
Sbjct: 8   QQAFRNAMAHLSAAVNVITSNGPAGRCGITATAVCSVTDSPPTLMLCINRNSEMNTVFKA 67

Query: 62  NGRLCINILAAHHEDVARIIAGMTGLAAEERMAQVRWEMGDYGQPVLPDALAVLEGDIVL 121
           NGRLC+N+L+  HE+VAR  AGMT +  E R A   W  G  G PVL  ALA L+G I  
Sbjct: 68  NGRLCVNVLSGEHEEVARHFAGMTEVPMERRFALHDWREGLAGLPVLHGALANLQGRIAE 127

Query: 122 QQQAGTHSVLFVEIRHIRLAAAQADGLAYFGRRFHRI 158
            Q+ GTHSVL +E+  I++   Q DGL YF R FHR+
Sbjct: 128 VQEIGTHSVLLLELEDIQV-LEQGDGLVYFSRSFHRL 163


>YPO1770 [R] COG1853 Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family Ype Yersinia
           pestis
          Length = 165

 Score =  157 bits (397), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/154 (53%), Positives = 100/154 (64%), Gaps = 1/154 (0%)

Query: 5   FRDAMARLSAAVNIITTDGPAGRAAMTVSAVSSVSDEPATVLVCINVSSAAHPILVGNGR 64
           FRDAMA LSAAVNI+TTDGPAGR  +T +AV SV+D P T+++CIN +SA +P+   NG 
Sbjct: 11  FRDAMACLSAAVNIVTTDGPAGRCGITATAVCSVTDTPPTLIICINRNSAMNPVFQQNGC 70

Query: 65  LCINILAAHHEDVARIIAGMTGLAAEERMAQVRWEMGDYGQPVLPDALAVLEGDIVLQQQ 124
           LCIN+L    E +AR  AGMTG + EER +   W +G  GQP+L D LA LEG I   Q 
Sbjct: 71  LCINVLNHQQEPMARHFAGMTGSSMEERFSWDIWNVGLLGQPLLRDTLASLEGVIEQVQT 130

Query: 125 AGTHSVLFVEIRHIRLAAAQADGLAYFGRRFHRI 158
            GTH V  V I  I L   Q  GL YF R FH +
Sbjct: 131 IGTHLVYLVHITQIVL-REQGHGLIYFKRHFHPV 163


>NMB1842 [R] COG1853 Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family Nme Neisseria
           meningitidis MC58
          Length = 166

 Score =  145 bits (367), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 98/155 (63%)

Query: 1   MKQDFRDAMARLSAAVNIITTDGPAGRAAMTVSAVSSVSDEPATVLVCINVSSAAHPILV 60
            +  FRDAMA  +A V++ITTDG AGR  +T++AV+ V+DEP TV++CIN S+   PIL 
Sbjct: 8   FQTSFRDAMASCAAGVHVITTDGAAGRYGITMTAVAPVTDEPPTVMLCINRSARIIPILS 67

Query: 61  GNGRLCINILAAHHEDVARIIAGMTGLAAEERMAQVRWEMGDYGQPVLPDALAVLEGDIV 120
            NG LCIN LA  H+DVA   AG+TGL+ EER A   W  G  GQ  +  ALA L G IV
Sbjct: 68  ENGSLCINTLADEHQDVAEHFAGLTGLSPEERFAYHIWHRGKTGQLEIEGALAHLHGHIV 127

Query: 121 LQQQAGTHSVLFVEIRHIRLAAAQADGLAYFGRRF 155
            + + GTH V +V +  I+    +   L YF R+F
Sbjct: 128 GKHEIGTHFVFYVRLDEIKNCGCKRPALLYFRRQF 162


>NMA0614 [R] COG1853 Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family NmA Neisseria
           meningitidis Z2491
          Length = 166

 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 98/155 (63%)

Query: 1   MKQDFRDAMARLSAAVNIITTDGPAGRAAMTVSAVSSVSDEPATVLVCINVSSAAHPILV 60
            +  FRDAMA  +A V++ITTDG AGR  +T++AV+ V+DEP TV++CIN S+   PIL 
Sbjct: 8   FQTSFRDAMASCAAGVHVITTDGAAGRYGITMTAVAPVTDEPPTVMLCINRSARIIPILS 67

Query: 61  GNGRLCINILAAHHEDVARIIAGMTGLAAEERMAQVRWEMGDYGQPVLPDALAVLEGDIV 120
            NG LCIN LA  H+DVA   AG+TGL+ EER A   W  G  GQ  +  ALA L G IV
Sbjct: 68  ENGSLCINTLADEHQDVAEHFAGLTGLSPEERFAYHIWHRGKTGQLEIEGALAHLHGHIV 127

Query: 121 LQQQAGTHSVLFVEIRHIRLAAAQADGLAYFGRRF 155
            + + GTH V +V +  I+    +   L YF R+F
Sbjct: 128 GKHEIGTHFVFYVRLDEIKNCGCKRPALLYFRRQF 162