BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0583.p         (138 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF1589 [R] COG1487 Predicted nucleic acid-binding protein, conta...   191   6e-49
AGpA21 [R] COG1487 Predicted nucleic acid-binding protein, conta...    96   2e-20
mll5078 [R] COG1487 Predicted nucleic acid-binding protein, cont...    90   1e-18
SMb21651 [R] COG1487 Predicted nucleic acid-binding protein, con...    89   3e-18
RSc0871 [R] COG1487 Predicted nucleic acid-binding protein, cont...    80   1e-15

>XF1589 [R] COG1487 Predicted nucleic acid-binding protein, contains PIN
           domain Xfa Xylella fastidiosa 9a5c
          Length = 142

 Score =  191 bits (484), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 111/137 (81%)

Query: 1   MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60
           MIVLDTNVVSEAMKP PDAAV+ W N+Q   TLYL+S+T++E+ FGIA L   +R+D+LA
Sbjct: 1   MIVLDTNVVSEAMKPEPDAAVRTWLNEQMSVTLYLSSVTLSELLFGIAVLPTSKRKDMLA 60

Query: 61  RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120
           R  +GLL +F +R+LPF+ DAAR +AELA  AR +GRGFPTPDGYIAAIAAS G++VASR
Sbjct: 61  RTLDGLLDLFNERVLPFNTDAARHYAELAVKARNSGRGFPTPDGYIAAIAASRGYIVASR 120

Query: 121 DVAPYLAAELTVINPWQ 137
           D + Y ++ + VINPWQ
Sbjct: 121 DTSAYESSGVQVINPWQ 137


>AGpA21 [R] COG1487 Predicted nucleic acid-binding protein, contains PIN
           domain Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 137

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 1/137 (0%)

Query: 1   MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60
           MI LDTNV+SE  K APD+AV AW      + L L ++ VAEI FGI  +   +R D L 
Sbjct: 1   MIFLDTNVMSETFKKAPDSAVIAWLVRHDAE-LALPTVAVAEIAFGIQKIRPDQRADRLE 59

Query: 61  RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120
                  R F D++  F  +AA ++ ++   A R GRG   PDG IAAI    G  +A+R
Sbjct: 60  EGLVSWRRRFSDKMFAFTEEAALAYGDIMGDAARQGRGMSAPDGMIAAITRINGGRLATR 119

Query: 121 DVAPYLAAELTVINPWQ 137
           ++  +    L +I+PWQ
Sbjct: 120 NLKDFETTGLELISPWQ 136


>mll5078 [R] COG1487 Predicted nucleic acid-binding protein, contains PIN
           domain Mlo Mesorhizobium loti
          Length = 137

 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 74/139 (53%), Gaps = 5/139 (3%)

Query: 1   MIVLDTNVVSEAMKPAPDAAVQAWF--NDQAPDTLYLTSITVAEIGFGIACLSAGRRQDL 58
           MI +DTNV+SE++K  PD AV AW   ND     L L ++T+AEI FGI  +    R D 
Sbjct: 1   MIFVDTNVISESLKKTPDPAVLAWLVRNDA---ELALPTVTIAEIAFGIQKIRPDERADR 57

Query: 59  LARRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVA 118
           L +        F DRI     +AA ++  +   A R G G   PDG IAAIA   G  +A
Sbjct: 58  LEQGLSRWRHRFADRIFGLTEEAALAYGAIMGAATRQGPGMSAPDGMIAAIARVNGGRLA 117

Query: 119 SRDVAPYLAAELTVINPWQ 137
           +R++  +    L +I+PW 
Sbjct: 118 TRNLNDFGTTSLDLISPWN 136


>SMb21651 [R] COG1487 Predicted nucleic acid-binding protein, contains PIN
           domain Sme Sinorhizobium meliloti
          Length = 137

 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 1/136 (0%)

Query: 1   MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60
           MI +DTNV+SE ++  P  AV AW      + L L ++T+AEI +GI  +   +R   L 
Sbjct: 1   MIFVDTNVISETLRKTPSEAVIAWLVRYDAE-LALPTVTIAEIAYGIQKIVPDQRAGRLQ 59

Query: 61  RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120
              +G  + F DRI     +AA  + E+   A R G     PDG IAAIA   G  +A+R
Sbjct: 60  HGLDGWRQRFADRIYGLTEEAAMEYGEIMGTASRHGHVMSAPDGMIAAIARVNGGRLATR 119

Query: 121 DVAPYLAAELTVINPW 136
           ++A +  A L +I+PW
Sbjct: 120 NLADFATAGLELISPW 135


>RSc0871 [R] COG1487 Predicted nucleic acid-binding protein, contains PIN
           domain Rso Ralstonia solanacearum
          Length = 137

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 4/137 (2%)

Query: 3   VLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLS-AGRRQDLLAR 61
           ++DTNV+SE  + APDA V AW  D+   +LYL+ +T+ EI  GI  L  A RRQ+L+  
Sbjct: 4   LIDTNVLSELRRKAPDARVAAWMQDRPRQSLYLSVLTLGEIRKGIERLEDAVRRQNLIDW 63

Query: 62  RFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASRD 121
               L   F  R+L  D   A     L +    AGR  P  DG +AA A      + +R+
Sbjct: 64  LEVELPNYFLGRLLDIDAHTADRWGRLMS---SAGRPLPAIDGLLAATALQHDLTLVTRN 120

Query: 122 VAPYLAAELTVINPWQA 138
              +   ++ +INPW+A
Sbjct: 121 TKDFAGLDIQLINPWEA 137