BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0561.p (227 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa0079 [E] COG0765 ABC-type amino acid transport system, permea... 194 1e-49 AGl383 [E] COG0765 ABC-type amino acid transport system, permeas... 189 4e-48 AGc2567 [E] COG0765 ABC-type amino acid transport system, permea... 187 2e-47 AGl664 [E] COG0765 ABC-type amino acid transport system, permeas... 180 2e-45 SMa0501 [E] COG0765 ABC-type amino acid transport system, permea... 173 2e-43 >SMa0079 [E] COG0765 ABC-type amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 222 Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 101/216 (46%), Positives = 144/216 (66%) Query: 3 YEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGYVE 62 YEF+FA V A + LL GAW TV+LS A L+G V+ CA + + LR + GY+E Sbjct: 2 YEFNFAPVLASFDQLLVGAWLTVRLSCAAMLIGLVVSVFCAWGKTAGPAILRHVIDGYIE 61 Query: 63 LIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQLE 122 +IRNTP L+Q +F+ FG+ S+G+ + + A LALV+N GAY EI+RAG+ESIH GQ+E Sbjct: 62 IIRNTPFLVQIFFIFFGMPSLGLRLSPNSAALLALVVNFGAYGTEIIRAGIESIHKGQVE 121 Query: 123 AASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRVQS 182 A LGLS Q+F +VV+ PA+ V+PALTSQF+ +ML +S++S + A++L N +QS Sbjct: 122 AGWALGLSRPQIFRYVVMKPALRTVYPALTSQFIYLMLNTSVVSVISADDLAAAGNDLQS 181 Query: 183 DTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFT 218 TF +FEV++ + YLAL+ A F+ L + F Sbjct: 182 ATFASFEVYIAVTLIYLALSVGFSALFYALEKAAFK 217 >AGl383 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 234 Score = 189 bits (480), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 100/229 (43%), Positives = 144/229 (62%), Gaps = 2/229 (0%) Query: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 M Y F F ++A + LL G W T++LS L+ +LG G A R G +R V GY Sbjct: 1 MSYTFQFGALAQYQNELLSGIWLTIKLSVLSIVLGCAFGILLASLRSINGGIVRIIVDGY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 VE+IRNTP L+Q + + FGL +G + A + + IN+ AYS EI+RAG+E++H Q Sbjct: 61 VEVIRNTPFLVQLFIVYFGLPGLGFRVGADTAALIGMTINLAAYSTEIIRAGIEAVHKSQ 120 Query: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 +EA LG + Q++ HV+++PA+ +V+P+L SQFVLMMLASSI S++ EL A V Sbjct: 121 IEAGEALGFTKYQIYRHVIIVPAIAKVYPSLCSQFVLMMLASSICSAISTHELAAAAAFV 180 Query: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRR--RKLGTPL 227 +S T+R+FEV++++ YLALA +R L+G +F RR RK T L Sbjct: 181 ESQTYRSFEVYIVVTLIYLALALSLRLILALVGMWLFGRRVARKTMTAL 229 >AGc2567 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 223 Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 99/220 (45%), Positives = 147/220 (66%) Query: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 M Y FDF + ++P + +G T++L + +LG LG CA R WLR V+ Y Sbjct: 1 MKYTFDFGWLLEYYPQIAKGIAITLELIAIGGVLGIALGIFCAWVRALGPKWLRPPVATY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 VELIRNTP LIQ +F+ FGL S+G+ + ++ A +A+V+N+GAYSCEI+RAG+++ GQ Sbjct: 61 VELIRNTPFLIQLFFIFFGLPSLGLQLSELSAANIAMVVNLGAYSCEIIRAGIQATPKGQ 120 Query: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 EA + L ++ + F HVVL+P+++R+WPAL+SQ V++ML SS++S + AE+L AN + Sbjct: 121 FEAGASLAMTRFETFRHVVLVPSLQRIWPALSSQVVIVMLGSSVVSQIAAEDLTFAANFI 180 Query: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRR 220 QS TFR FE +++ YL LA L+R + G L+F RR Sbjct: 181 QSRTFRAFEAYMVSTVIYLVLAILLRQLLVMGGNLIFPRR 220 >AGl664 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 270 Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 135/218 (61%) Query: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 M Y DF++V P LL T+ L+ L VLG VAR SR LR V G+ Sbjct: 49 MSYSLDFSAVIERLPELLLACLATIGLAIAGMSLATVLGVLGVVARRSRFKLLRGLVIGF 108 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 VE IRNTP L+Q +F+ F L +G+ + A +AL +N GAY+ EI+R G++SI GQ Sbjct: 109 VEAIRNTPFLVQIFFIFFALPQIGIKLNPTVTAIIALALNGGAYAIEIIRGGVDSIPKGQ 168 Query: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 +EA LGL AQ+F H++L PA+ V+P+LTSQF+++ L +S+ +S+ A EL VA ++ Sbjct: 169 VEAGLALGLHRAQIFRHIILKPALRAVYPSLTSQFIMLTLTTSVCTSIAAYELTSVAQKI 228 Query: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFT 218 ++DTFR+FEV+ + YL ++ LM F L+ + F+ Sbjct: 229 EADTFRSFEVYFSITLLYLVISSLMMGIFALISRASFS 266 >SMa0501 [E] COG0765 ABC-type amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 228 Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 135/222 (60%) Query: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 M Y F F + + P ++ G W T+ LSF+ G LG CAV R V Y Sbjct: 1 MDYTFQFGPLLNYLPQIVSGLWLTIGLSFVGIFGGIALGIFCAVMSTLSSPIPRLLVRLY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 VE++RNTPLL+Q + + FGL ++G+ + + +ALV+N G Y EIVR G+E+ H Q Sbjct: 61 VEVVRNTPLLVQIFVIFFGLPNIGIRLSPLTSVFIALVLNNGGYVAEIVRGGIEATHRSQ 120 Query: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 +EAA LGLS Q +V+L PA+E+V+ + SQ VL+ML++S++S++G E+L G A Sbjct: 121 VEAAESLGLSYFQTLRYVILPPALEKVFTPVVSQCVLLMLSTSLVSAIGVEDLTGAAMIA 180 Query: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRK 222 S+TFR E++L++ Y+ L + RA + G ++FTR R+ Sbjct: 181 SSETFRTMEIYLVVAMVYVVLNFVFRAVLNVAGLMIFTRSRR 222