BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0556.p         (124 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2642 [J] COG1188 Ribosome-associated heat shock protein impli...   136   1e-32
NMB1176 [J] COG1188 Ribosome-associated heat shock protein impli...    93   1e-19
NMB1138 [J] COG1188 Ribosome-associated heat shock protein impli...    93   1e-19
NMA1348 [J] COG1188 Ribosome-associated heat shock protein impli...    93   1e-19
VC2735 [J] COG1188 Ribosome-associated heat shock protein implic...    91   9e-19

>RSc2642 [J] COG1188 Ribosome-associated heat shock protein implicated in
           the recycling of the 50S subunit (S4 paralog) Rso
           Ralstonia solanacearum
          Length = 131

 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 87/118 (73%)

Query: 4   TRIDKWCWAARFFKTRSQATEAVERGRIRLNGERTKPAHNVKAGDRLDVDNGATEWEVLV 63
            RIDKW WAARFFKTRSQAT+AVERGR+++N +  +PA +VK GDR+ V     +WEV V
Sbjct: 11  VRIDKWLWAARFFKTRSQATDAVERGRVQINDQPVRPAKDVKIGDRVRVAAHEQQWEVNV 70

Query: 64  TGIADKRGSAAIAATLYQETEESIARRAAQAERHRLFREPSAEIKGRPTKRDRRLLDR 121
             +A+ RG A++A TLY ET+ S  +R   A++  L+REP+ +I GRPTKRDRR +D+
Sbjct: 71  LALAEVRGPASVAQTLYAETQASRLKRVGAAQQRHLYREPATQIAGRPTKRDRRRIDK 128


>NMB1176 [J] COG1188 Ribosome-associated heat shock protein implicated in
           the recycling of the 50S subunit (S4 paralog) Nme
           Neisseria meningitidis MC58
          Length = 133

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 72/117 (61%)

Query: 5   RIDKWCWAARFFKTRSQATEAVERGRIRLNGERTKPAHNVKAGDRLDVDNGATEWEVLVT 64
           R+DKW WAARFFKTRS A + +E GR+++NG + K +  +  GD +D+   +  +++ V 
Sbjct: 11  RLDKWLWAARFFKTRSLAQKHIELGRVQVNGSKVKNSKTIDIGDIIDLTLNSLPYKIKVK 70

Query: 65  GIADKRGSAAIAATLYQETEESIARRAAQAERHRLFREPSAEIKGRPTKRDRRLLDR 121
           G+  +R  A+ A  LY+E  ++   R  + +  +  R  SA   GRPTKRDRR LDR
Sbjct: 71  GLNHQRRPASEARLLYEEDAKTATLREERKQLDQFSRITSAYPDGRPTKRDRRQLDR 127


>NMB1138 [J] COG1188 Ribosome-associated heat shock protein implicated in
           the recycling of the 50S subunit (S4 paralog) Nme
           Neisseria meningitidis MC58
          Length = 133

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 72/117 (61%)

Query: 5   RIDKWCWAARFFKTRSQATEAVERGRIRLNGERTKPAHNVKAGDRLDVDNGATEWEVLVT 64
           R+DKW WAARFFKTRS A + +E GR+++NG + K +  +  GD +D+   +  +++ V 
Sbjct: 11  RLDKWLWAARFFKTRSLAQKHIELGRVQVNGSKVKNSKTIDIGDIIDLTLNSLPYKIKVK 70

Query: 65  GIADKRGSAAIAATLYQETEESIARRAAQAERHRLFREPSAEIKGRPTKRDRRLLDR 121
           G+  +R  A+ A  LY+E  ++   R  + +  +  R  SA   GRPTKRDRR LDR
Sbjct: 71  GLNHQRRPASEARLLYEEDAKTATLREERKQLDQFSRITSAYPDGRPTKRDRRQLDR 127


>NMA1348 [J] COG1188 Ribosome-associated heat shock protein implicated in
           the recycling of the 50S subunit (S4 paralog) NmA
           Neisseria meningitidis Z2491
          Length = 133

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 72/117 (61%)

Query: 5   RIDKWCWAARFFKTRSQATEAVERGRIRLNGERTKPAHNVKAGDRLDVDNGATEWEVLVT 64
           R+DKW WAARFFKTRS A + +E GR+++NG + K +  +  GD +D+   +  +++ V 
Sbjct: 11  RLDKWLWAARFFKTRSLAQKHIELGRVQVNGSKVKNSKTIDIGDIIDLTLNSLPYKIKVK 70

Query: 65  GIADKRGSAAIAATLYQETEESIARRAAQAERHRLFREPSAEIKGRPTKRDRRLLDR 121
           G+  +R  A+ A  LY+E  ++   R  + +  +  R  SA   GRPTKRDRR LDR
Sbjct: 71  GLNHQRRPASEARLLYEEDAKTATLREERKQLDQFSRITSAYPDGRPTKRDRRQLDR 127


>VC2735 [J] COG1188 Ribosome-associated heat shock protein implicated in
           the recycling of the 50S subunit (S4 paralog) Vch Vibrio
           cholerae
          Length = 127

 Score = 90.5 bits (223), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 4/118 (3%)

Query: 2   DTTRIDKWCWAARFFKTRSQATEAVERGRIRLNGERTKPAHNVKAGDRLDVDNGATEWEV 61
           +  R+DKW WAARF+KTRS A   VE G++  NG+R KP+ +V+ G ++ +  G  E  +
Sbjct: 8   EEVRLDKWLWAARFYKTRSLARNMVEGGKVHYNGQRAKPSKSVEIGAQITLRQGHDEKTI 67

Query: 62  LVTGIADKRGSAAIAATLYQETEESIARRAAQAERHRLFREPSAEIKGRPTKRDRRLL 119
           ++  I+D+R  A  A  LY+ET ESI +R    ER+ + R+ +     RP K+ RR L
Sbjct: 68  IIEKISDQRRGAPEAQQLYRETAESITKR----ERNAMMRQLNPSPDRRPDKKQRRDL 121