BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0554.p         (233 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0472 [K] COG1309 Transcriptional regulator Rso Ralstonia sola...   266   3e-71
AGpA419 [K] COG1309 Transcriptional regulator Atu Agrobacterium ...   120   2e-27
alr4567 [K] COG1309 Transcriptional regulator Nos Nostoc sp. PCC...    64   4e-10

>RSc0472 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 213

 Score =  266 bits (680), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 133/208 (63%), Positives = 158/208 (75%), Gaps = 1/208 (0%)

Query: 4   TSKVTTAPARPKFLRKGEQTRAAILDVALELASRDGLEGLTIGLLAEKMKMSKSGVFAHF 63
           T++  ++ A    +RKGE TRAAILD ALELASRDGLEGLTIG+LAE+M+MSKSGVFAHF
Sbjct: 5   TARPESSHAAATPMRKGELTRAAILDAALELASRDGLEGLTIGVLAERMQMSKSGVFAHF 64

Query: 64  GSREDLQIEVVRLYHNRFEADVFYPSIKEPRGLPRLEAMFARWVKQVTVEIALGCIYISG 123
           GSREDLQ+EVVR YH RFE +VFYPS+ EPRGLPRL ++  RW+++   E+  GCIYISG
Sbjct: 65  GSREDLQVEVVREYHRRFEREVFYPSLTEPRGLPRLWSLVRRWMERRIQEVTTGCIYISG 124

Query: 124 AVEYDDRPGA-IRDHLVAMVQAWRDALERCIQQAIEAGHLRPEVDVSQMVYEMYGLILAL 182
           AVEYDDR G+ +RD LV  V  WR AL R I+QA E GHLR E D   M++EMY L L L
Sbjct: 125 AVEYDDRAGSPVRDELVKSVTIWRAALTRAIEQAKEEGHLRAEADPKLMLFEMYSLELGL 184

Query: 183 HHDARFLHIPGSVERAEASFRRLIGSYR 210
           HHDARFL +P S E A  +  +LI SYR
Sbjct: 185 HHDARFLRVPDSAELAMVALNKLIQSYR 212


>AGpA419 [K] COG1309 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 221

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 1/199 (0%)

Query: 22  QTRAAILDVALELASRDGLEGLTIGLLAEKMKMSKSGVFAHFGSREDLQIEVVRLYHNRF 81
            T+A IL + ++  S  GL G+T+G LA    +SKSG+FAHF S+E LQIE++       
Sbjct: 16  NTKAKILHIGIDQLSVSGLAGVTVGQLANASALSKSGLFAHFKSKEQLQIELLSEAARIA 75

Query: 82  EADVFYPSIKEPRGLPRLEAMFARWVKQVT-VEIALGCIYISGAVEYDDRPGAIRDHLVA 140
           +  +  P++K  +GL RL A+   W        +  GC   +   E DD  G +RDH   
Sbjct: 76  KLTIVEPAMKADQGLSRLRAVVELWFGWSRRAGLQGGCPLAAALFELDDDVGDVRDHAAQ 135

Query: 141 MVQAWRDALERCIQQAIEAGHLRPEVDVSQMVYEMYGLILALHHDARFLHIPGSVERAEA 200
           +   WR+ L   + +++ AGHL    DV+Q ++E+ G+ L  H   RF     +  RA  
Sbjct: 136 LTVRWRNLLTMLVGESVTAGHLSAATDVAQFIWELNGIYLNHHVSTRFFREKEADARATY 195

Query: 201 SFRRLIGSYRPQGSDSLSS 219
           +F  LI  +RP+   ++++
Sbjct: 196 AFEALIARHRPESGSAVTA 214


>alr4567 [K] COG1309 Transcriptional regulator Nos Nostoc sp. PCC 7120
          Length = 201

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 3/157 (1%)

Query: 17  LRKGEQTRAAILDVALELASRDGLEGLTIGLLAEKMKMSKSGVFAHFGSREDLQIEVVRL 76
           + KGE+T+  IL  A EL ++ G  G +I  +     + K G++ HF S+++L ++    
Sbjct: 1   MSKGEETKTRILQQAAELFNQQGYAGSSISDIMRVTGLQKGGIYNHFQSKDELALQAFD- 59

Query: 77  YHNRFEADVFYPSIKEPRG-LPRLEAMFARWVKQV-TVEIALGCIYISGAVEYDDRPGAI 134
           Y     +  +  +++  R  + R++A+ A +        I  GC  ++ AVE DD   A+
Sbjct: 60  YAIASISKHYRIALRSKRNAIERVQALIAVFSSFAENPPIPGGCPLLNTAVESDDAHPAL 119

Query: 135 RDHLVAMVQAWRDALERCIQQAIEAGHLRPEVDVSQM 171
           R+     + +W + + R IQ  IE G + P V+  ++
Sbjct: 120 RERTQQAMNSWLNMIRRIIQTGIERGEIEPHVNAEEI 156