BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0544.p (425 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl2836 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 437 e-122 SMa1850 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 432 e-121 mlr7042 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 429 e-120 AGl1811 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 229 8e-60 PA5309 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) P... 213 9e-55 >AGl2836 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 424 Score = 437 bits (1123), Expect = e-122, Method: Compositional matrix adjust. Identities = 223/426 (52%), Positives = 285/426 (66%), Gaps = 4/426 (0%) Query: 2 MQLKSYWLDTSPAFVSQTRTLPEGACDVVVVGGGITGSAAALALARKGARVVVCEADIVG 61 M+L SYW DT+P F + EG DV V+GGG TG AA LA+ GARVVV E VG Sbjct: 1 MKLVSYWHDTAPLFAGAAQGPVEGHYDVAVIGGGFTGLGAARQLAKAGARVVVLEGQRVG 60 Query: 62 GAASGRNGGMCNNGFAQDYATLSQRLGVEWANRLYRAFDAGVDTVERLVREESIDCSFAR 121 ASGRNGG NNG A Y + LG E A LY+A DA +DT+E L+ EE IDC+F R Sbjct: 61 WGASGRNGGHLNNGLAHSYLSAKAELGKERAIALYQALDACIDTLESLIAEEKIDCNFRR 120 Query: 122 HGKLKLAAKPEHVDKLARSQELLARHVDGDTRLLSRAQLREELGSDRYHGGLLMHKSAGM 181 GKLK+A+KP+H + LAR+ E + VD DT LLS A L+ E+GS ++G +L KSA M Sbjct: 121 AGKLKMASKPQHFEGLARNFEAVHAEVDPDTALLSEADLKAEIGSP-FYGAMLSKKSAMM 179 Query: 182 HVGRYVRGLAQAAQRRGALYLERTPVLGIEAKNGR-YAVRTSAGVVHAGQVLLASGISQV 240 H+GRYV GLA+AA R GA+ E V +NG+ + + T+ G V A VL+A+G Sbjct: 180 HMGRYVAGLAEAASRHGAVIFENAAVTK-HTQNGKLHDLETTRGKVTADNVLVATGAYTP 238 Query: 241 GPFGWIRRRIVPVGAFLIVTEPLPDALLKQLLPTQRMYTDTKNFVNYFRATPDQRLLFGG 300 F + RRRI+ VG+F+I T PL DA +K +P R Y ++ N NYFR PD RL+FGG Sbjct: 239 SGFSYFRRRIIAVGSFIIATRPLTDAEIKASVPGNRTYVNSMNIGNYFRLAPDNRLIFGG 298 Query: 301 RARF-AVSNPQSDARSGEILRAQMLEVFPALAQTRIDYCWGGMVDMTTDRLPRAGQRDGL 359 RARF A S+ +SDA+SGEIL+ + +FP LA IDYCWGG+VDMT DR PRAG DG+ Sbjct: 299 RARFSATSDQRSDAKSGEILKDALHRIFPQLAHVPIDYCWGGLVDMTKDRYPRAGFHDGV 358 Query: 360 YYSMGYSGHGTHMATLMGSMMAEIMDGHADLNPWKDFDWPAIPGHFGKPWFLPFVGAWYR 419 +Y+MGYSGHG ++T +G +MA+ + G D NP K DWPA+PGHFGKPWFLP VG +Y+ Sbjct: 359 WYAMGYSGHGAQLSTHLGMIMADTIMGRPDTNPLKGLDWPAVPGHFGKPWFLPLVGLYYK 418 Query: 420 LKDRLQ 425 + D+ Q Sbjct: 419 MLDKYQ 424 >SMa1850 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Sme Sinorhizobium meliloti Length = 425 Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust. Identities = 218/426 (51%), Positives = 285/426 (66%), Gaps = 3/426 (0%) Query: 2 MQLKSYWLDTSPAFVSQTRTLPEGACDVVVVGGGITGSAAALALARKGARVVVCEADIVG 61 M+ SYW DT+PAF + EG DV V+GGG TG AAA LA+ G++VVV EA+ VG Sbjct: 1 MKFLSYWHDTAPAFAGAAQGSVEGHFDVAVIGGGFTGLAAARQLAKAGSKVVVLEAEKVG 60 Query: 62 GAASGRNGGMCNNGFAQDYATLSQRLGVEWANRLYRAFDAGVDTVERLVREESIDCSFAR 121 ASGRNGG NNG A Y LG E A LY+A D +DT+E L+ EE IDCS R Sbjct: 61 WGASGRNGGHLNNGLAHSYLAAKAELGKERAIALYKALDDSIDTIEALIAEEGIDCSLRR 120 Query: 122 HGKLKLAAKPEHVDKLARSQELLARHVDGDTRLLSRAQLREELGSDRYHGGLLMHKSAGM 181 GKLKLA+KP+H + +AR+ E + VD DT LLS L++ELG+ + G +L KSA M Sbjct: 121 AGKLKLASKPQHFETIARNFEAVHAEVDPDTALLSADDLKQELGAP-FFGAMLSKKSAMM 179 Query: 182 HVGRYVRGLAQAAQRRGALYLERTPVLGIEAK-NGRYAVRTSAGVVHAGQVLLASGISQV 240 H+GRYV GLA+AA R GA E+ V + GR+A++T+ G V A VL+A+G Sbjct: 180 HMGRYVVGLAEAATRHGATIFEQAAVTEHRQEGGGRHALKTTRGNVTADAVLVATGAYTP 239 Query: 241 GPFGWIRRRIVPVGAFLIVTEPLPDALLKQLLPTQRMYTDTKNFVNYFRATPDQRLLFGG 300 FG+ RRRI+ VG+F+I T PL ++ +P R + N NYFR +PD RL+FGG Sbjct: 240 SAFGYFRRRIIAVGSFIIATRPLTAEEIEATMPGNRTCVTSMNIGNYFRLSPDSRLIFGG 299 Query: 301 RARF-AVSNPQSDARSGEILRAQMLEVFPALAQTRIDYCWGGMVDMTTDRLPRAGQRDGL 359 RARF A S+ +SDA+SG IL+A + E+FP LA IDYCWGG+ DMT DR PRAG DG+ Sbjct: 300 RARFSATSDQRSDAKSGAILKASLAEIFPQLANVDIDYCWGGLADMTKDRFPRAGYHDGV 359 Query: 360 YYSMGYSGHGTHMATLMGSMMAEIMDGHADLNPWKDFDWPAIPGHFGKPWFLPFVGAWYR 419 +Y+MGYSGHG ++T +G ++A+ + G D NP K F+WPA+PGHFGKPWFLP VG +Y+ Sbjct: 360 WYAMGYSGHGAQLSTHLGMIIADAILGRPDRNPLKGFEWPAVPGHFGKPWFLPLVGMYYK 419 Query: 420 LKDRLQ 425 + DR++ Sbjct: 420 MLDRVR 425 >mlr7042 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Mlo Mesorhizobium loti Length = 446 Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust. Identities = 222/425 (52%), Positives = 281/425 (66%), Gaps = 2/425 (0%) Query: 2 MQLKSYWLDTSPAFVSQTRTLPEGACDVVVVGGGITGSAAALALARKGARVVVCEADIVG 61 M+L SYW DT+PAF + EG D ++GGG TG AAA LA+ GA+V V EA VG Sbjct: 23 MKLVSYWHDTAPAFSGGAQGPVEGHYDAAIIGGGFTGLAAARQLAKAGAKVAVLEAQRVG 82 Query: 62 GAASGRNGGMCNNGFAQDYATLSQRLGVEWANRLYRAFDAGVDTVERLVREESIDCSFAR 121 ASGRNGG NNG A Y + LG + A LYRA D+ VDT+E LV EE IDC F R Sbjct: 83 WGASGRNGGHLNNGLAHSYLSAKSELGKDRAIALYRALDSSVDTIEALVAEEGIDCDFRR 142 Query: 122 HGKLKLAAKPEHVDKLARSQELLARHVDGDTRLLSRAQLREELGSDRYHGGLLMHKSAGM 181 GKLKLA+KP H + +AR+ E + VD DT LLS A L+ E+GS ++G +L KSA M Sbjct: 143 AGKLKLASKPRHFEAIARNFEAVHAEVDPDTALLSAADLQSEIGSP-FYGAMLSKKSAMM 201 Query: 182 HVGRYVRGLAQAAQRRGALYLERTPVLGIEAKNGRYAVRTSAGVVHAGQVLLASGISQVG 241 H+GRYV GLA AA R GA+ E T V + GR+ + TS G V A VL+A+G Sbjct: 202 HMGRYVAGLATAATRHGAVIHENTVVTERKQVGGRHELTTSRGRVSADNVLVATGAYTTP 261 Query: 242 PFGWIRRRIVPVGAFLIVTEPLPDALLKQLLPTQRMYTDTKNFVNYFRATPDQRLLFGGR 301 F + RRRI+ VG+F+I T PL D + +P R + N NYFR +PD RL+FGGR Sbjct: 262 NFDYFRRRIIAVGSFIIATRPLSDTEVAATMPGNRTCVTSMNIGNYFRLSPDNRLIFGGR 321 Query: 302 ARF-AVSNPQSDARSGEILRAQMLEVFPALAQTRIDYCWGGMVDMTTDRLPRAGQRDGLY 360 ARF A S+ +SDARSG+ILRA + +FP LA+ IDYCWGG+VDMT DR PRAG +G++ Sbjct: 322 ARFSATSDQRSDARSGQILRAGLAAIFPQLAKVGIDYCWGGLVDMTKDRFPRAGYHEGVW 381 Query: 361 YSMGYSGHGTHMATLMGSMMAEIMDGHADLNPWKDFDWPAIPGHFGKPWFLPFVGAWYRL 420 Y+MGYSGHG ++T +G ++A+ M G D NP K +WPAIPG+ GKPWFLP VG +Y+ Sbjct: 382 YAMGYSGHGAQLSTHLGMILADAMLGREDRNPLKGLEWPAIPGYSGKPWFLPMVGLYYKA 441 Query: 421 KDRLQ 425 DR+Q Sbjct: 442 LDRIQ 446 >AGl1811 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 440 Score = 229 bits (585), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 145/438 (33%), Positives = 231/438 (52%), Gaps = 20/438 (4%) Query: 1 MMQLKS------------YWLDTSPAFVSQTRTLPEGACDVVVVGGGITGSAAALALARK 48 MMQLK+ +W + P+ V QT LP + +V ++G G TG AAL LAR Sbjct: 4 MMQLKAPFFSDNATDLPFWWEEARPSPV-QTDDLPS-STEVAIIGAGFTGLNAALVLARA 61 Query: 49 GARVVVCEADIVGGAASGRNGGMCNNGFAQDYATLSQRLGVEWANRLYRAFDAGVDTVER 108 G +V V +AD G AS RNGG G+A + + G + A ++ + V+ Sbjct: 62 GKQVSVFDADEPGYGASSRNGGFLGPGWA--FFDTGMQYGADTARQIVEESFHSLQHVKD 119 Query: 109 LVREESIDCSFARHGKLKLAAKPEHVDKLARSQELLARHVDGDTRLLSRAQLREELGSDR 168 +V E IDC G K A P D + R+ + + + + + ++ R++ +E+GSD Sbjct: 120 VVAMEKIDCDLKEVGYFKGAMTPRVYDAIGRNMDRIRKIIPCNVYMVPRSEQHKEIGSDL 179 Query: 169 YHGGLLMHKSAGMHVGRYVRGLAQAAQRRGALYLERTPVLGIEAKNGRYAVRTSAGVVHA 228 YHGG+ M G+H +YV+GLA+AA R G V +E KNG ++ + + + A Sbjct: 180 YHGGVAMPGYCGIHPAKYVKGLAEAANRLGVKIYSNARVSDLEGKNGGFSFKVGSRTIAA 239 Query: 229 GQVLLASGISQVGPFGWIRRRIVPVGAFLIVTEPLPDALLKQLLPTQRMYTDTKNFVNYF 288 Q+LLA+ ++RRI+PVG+ LI TE LP ++ +L+P ++M ++ V Y+ Sbjct: 240 RQILLAANGYSGSLLPHLKRRIIPVGSGLIATEQLPVEVMDRLMPKRQMLAGSQRVVTYY 299 Query: 289 RATPDQ-RLLFGGRARFAVSNPQSDARSGEILRAQMLEVFPALAQTRIDYCWGGMVDMTT 347 R +PD R++FGGR +S + + +R+ +L VFP LA +I W G + T Sbjct: 300 RPSPDNTRIVFGGRVLNMSGAHESAVANAKYIRSLLLAVFPELASAKITNYWHGQLGFTF 359 Query: 348 DRLPRAGQRDGLYYSMGYSGHGTHMATLMGSMMAEIMDGHADLNP--WKDFDWPAIPGHF 405 D LP DG+Y++ GY+G G A+ +GS +A M G +DL +++ + + Sbjct: 360 DHLPHVQTIDGMYFAGGYNGTGVARASWLGSRVAYEMLG-SDLGKTVYRNLPFDGRRFYN 418 Query: 406 GKPWFLPFVGAWYRLKDR 423 GKP+FLP +Y + D+ Sbjct: 419 GKPYFLPLAVWYYGMLDK 436 >PA5309 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Pae Pseudomonas aeruginosa Length = 439 Score = 213 bits (541), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 149/414 (35%), Positives = 210/414 (50%), Gaps = 24/414 (5%) Query: 24 EGACDVVVVGGGITGSAAALALARKGARVVVCEADIVGGAASGRNGGMCNNGFAQDYATL 83 E DV VVGGG +G AL LA++G VV+ EA +G ASGRNGG G D Sbjct: 35 EEQADVCVVGGGFSGVNTALELAQRGFSVVLLEAHQIGWGASGRNGGQLIRGVGHDVEQF 94 Query: 84 SQRLGVEWANRLYRAFDAGVDTVERLVREESIDCSFARHGKLKLAAKPEHVDKLARS-QE 142 +G + L V+ V R V + +IDC R G LA KP +E Sbjct: 95 LPVIGADGVKALKLMGLEAVEIVRRRVEQYAIDCDL-RWGYCDLANKPGDYQGFREDMEE 153 Query: 143 LLARHVDGDTRLLSRAQLREELGSDRYHGGLLMHKSAGMHVGRYVRGLAQAAQRRGALYL 202 L A + RL+ A++R +GSDRY GGL+ S +H V G A AAQ G Sbjct: 154 LQALGYRHEMRLVPAAEMRSVIGSDRYVGGLVDMGSGHLHPLNLVLGEAAAAQSLGVRLF 213 Query: 203 ERTPVLGIEAKNGRYAVRTSAGVVHAGQVLLASG--ISQVGPFGWIRRRIVPVGAFLIVT 260 ER+ V+ I+ V T+ G V A ++L ++ + P + +++P G+++I T Sbjct: 214 ERSTVMRIDYGT-EVQVHTATGKVRAKTLVLGCNAYMNDLNPL--LGGKVLPAGSYVIAT 270 Query: 261 EPLPDALLKQLLPTQRMYTDTKNFVNYFRATPDQRLLFGGRARFAVSNPQSDARSGEILR 320 EPL + L +QLLP D + ++Y+R + D RLLFGG ++ +P A +R Sbjct: 271 EPLDEKLARQLLPQNMAVCDQRVALDYYRLSADNRLLFGGACHYSGRDPSDIA---AYMR 327 Query: 321 AQMLEVFPALAQTRIDYCWGGMVDMTTDRLPRAGQRDG---LYYSMGYSGHGTHMATLMG 377 +MLEVFP LA RIDY WGGM+ + +RLP+ G+ G +Y++ YSGHG + L G Sbjct: 328 PKMLEVFPQLANVRIDYQWGGMIGIGANRLPQIGRLPGQPNVYFAQAYSGHGVNATHLAG 387 Query: 378 SMMAEIMDGHADLNPWKDFDWPAIPGHF----GKPWFLPFVG---AWYRLKDRL 424 ++AE + G FD A H GK P + AWYRLK++L Sbjct: 388 QLLAEAIGGQQS----DGFDLFAKVPHITFPGGKLLRSPLLALGMAWYRLKEKL 437