BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0542.p         (77 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer...    65   3e-11
RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...    65   5e-11
CC2281 [NT] COG0840 Methyl-accepting chemotaxis protein Ccr Caul...    63   2e-10
CC3349_2 [NT] COG0840 Methyl-accepting chemotaxis protein Ccr Ca...    63   2e-10
YPO1229 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer...    62   2e-10

>YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia
           pestis
          Length = 649

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 54/76 (71%)

Query: 1   MRDIVTHTADVQSAIADIARTTTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTL 60
           M +IV   + V+  +A+IA  + EQ+RGI +V+ A+ ++D   QQNAALVEESAAA+ +L
Sbjct: 536 MEEIVRSVSHVRDIMAEIASASDEQSRGITQVSLAISEMDSTTQQNAALVEESAAAADSL 595

Query: 61  QQQANVLAATIARFRI 76
            +QA +LA  +A FR+
Sbjct: 596 AEQAILLAQAVAVFRL 611


>RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 543

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 55/76 (72%)

Query: 1   MRDIVTHTADVQSAIADIARTTTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTL 60
           +RD+V    +V + +++I+ ++ EQ+ GI+++N+A+ Q+D   Q+NA+LVEESA A+  L
Sbjct: 438 IRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDKATQENASLVEESATAAQAL 497

Query: 61  QQQANVLAATIARFRI 76
           Q QAN LA  ++ F++
Sbjct: 498 QDQANQLADMVSTFKL 513


>CC2281 [NT] COG0840 Methyl-accepting chemotaxis protein Ccr Caulobacter
           vibrioides
          Length = 781

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 50/76 (65%)

Query: 1   MRDIVTHTADVQSAIADIARTTTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTL 60
           +R+I+   A++   + +IA ++ EQ  G+ EVNQAV Q+D + QQNAA+VE+S AAS  L
Sbjct: 651 LREILVQVAEINELVGEIAASSKEQAVGLAEVNQAVNQMDQVTQQNAAMVEQSTAASHAL 710

Query: 61  QQQANVLAATIARFRI 76
             +A  L   I RF++
Sbjct: 711 SNEAAQLERLIGRFQV 726


>CC3349_2 [NT] COG0840 Methyl-accepting chemotaxis protein Ccr Caulobacter
           vibrioides
          Length = 298

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 56/76 (73%)

Query: 1   MRDIVTHTADVQSAIADIARTTTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTL 60
           ++ IV+  +++ + I++IA+++ EQ  G+ EVN AV Q+D + QQNAA+VEE+ AA+++L
Sbjct: 211 LQSIVSKVSEIDTLISEIAQSSREQATGLGEVNVAVNQMDQVTQQNAAMVEEATAAAASL 270

Query: 61  QQQANVLAATIARFRI 76
           + +A+ L   IARF +
Sbjct: 271 RHEADELDKLIARFHV 286


>YPO1229 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia
           pestis
          Length = 595

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 53/76 (69%)

Query: 1   MRDIVTHTADVQSAIADIARTTTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTL 60
           M DIV+  +DV + +++I     EQ RGI E+N AV QLD MVQQNAALV+ES AAS+ L
Sbjct: 520 MTDIVSSVSDVTTIMSEITNAADEQMRGIHEINSAVAQLDTMVQQNAALVQESTAASAAL 579

Query: 61  QQQANVLAATIARFRI 76
           Q QA  L  T+ +F+I
Sbjct: 580 QAQAADLTDTVNQFKI 595