BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0541.p         (384 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc4876 [T] COG2199 FOG Atu Agrobacterium tumefaciens strain C58...   122   1e-27
sll0267_5 [T] COG2199 FOG Syn Synechocystis                           117   5e-26
PA4332 [T] COG2199 FOG Pae Pseudomonas aeruginosa                     116   8e-26
PA1851 [T] COG2199 FOG Pae Pseudomonas aeruginosa                     115   2e-25
aq_035_2 [T] COG2199 FOG Aae Aquifex aeolicus                         115   2e-25

>AGc4876 [T] COG2199 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 393

 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 107/209 (51%), Gaps = 14/209 (6%)

Query: 181 GGTLIQIS-LVEGSMAV----------MLIALSMTGTERHRREERIGQLAARDPLTGLLN 229
           GG++I++S   E   A            L+ALS+  ++     +R    A  DPLT +LN
Sbjct: 170 GGSMIELSEFFESDYAFYMQLAASIFGFLLALSVLASQISVTVDRHLHAAEHDPLTDVLN 229

Query: 230 RRALQARAPALIAQASQAHPGALLLIDIDNFKQVNDLHGHAAGDKLLEALSTLLREVLPD 289
           RR    R P      +    GA++  DID+FK++ND++GHAAGD +L  LS LLR   PD
Sbjct: 230 RRGFDRRVPDF---RNDTPDGAIIACDIDHFKRINDVYGHAAGDIVLIGLSDLLRRNAPD 286

Query: 290 DALAARLGGDEFAILLPDGRQAQVAHIGEQLRQAFVHVTQTAVATPEAVSLSVGVSLFST 349
           DAL AR GG+EF + LP    A    +   +R     +          ++ S GVS  + 
Sbjct: 287 DALVARFGGEEFVVFLPGQTAAAAGQLANGMRTGLSSLDWRNRGVTSQITASFGVSAVAR 346

Query: 350 AALDLAGLMARADAALYEAKRAGRNQIVI 378
               +   + RAD +LY AKR GR+Q+V+
Sbjct: 347 GDHSIHDAIKRADDSLYAAKRGGRDQVVL 375


>sll0267_5 [T] COG2199 FOG Syn Synechocystis
          Length = 187

 Score =  117 bits (292), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/187 (39%), Positives = 108/187 (57%), Gaps = 18/187 (9%)

Query: 208 RHRREERIGQLAARDPLTGLLNRRALQARAPALIAQASQA-HPGALLLIDIDNFKQVNDL 266
           R + E +I  LA  DPLT L NRR L  RA   +A A ++ H GA++LID+D FK +ND 
Sbjct: 1   RKQAEAQIENLAYYDPLTALPNRRLLLDRAENALALAQRSKHFGAIVLIDLDGFKTLNDA 60

Query: 267 HGHAAGDKLLEALSTLLREVLPDDALAARLGGDEFAILLPDGRQAQVAH----------- 315
            GH +GD+LL+ ++  L + L D    ARLGGDEF +LLP     ++AH           
Sbjct: 61  RGHDSGDRLLQMVAKRLADSLRDSDTVARLGGDEFIVLLP-----ELAHDRELAARLGLG 115

Query: 316 IGEQLRQAFVHVTQTAVATPEAVSLSVGVSLFSTAALDLAGLMARADAALYEAKRAGRNQ 375
           +GE++RQA      T  A    +S S+G++LF      ++ L   AD A+Y+AK+AGR++
Sbjct: 116 VGEKIRQALA-TPFTLEAEQVQISGSIGITLFPKLNEKVSDLFKEADTAMYQAKKAGRDK 174

Query: 376 IVITPSN 382
           + +  S 
Sbjct: 175 VCLFESQ 181


>PA4332 [T] COG2199 FOG Pae Pseudomonas aeruginosa
          Length = 487

 Score =  116 bits (291), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 93/167 (55%), Gaps = 2/167 (1%)

Query: 213 ERIGQLAARDPLTGLLNRRALQARAPALIAQASQAHPGALLLIDIDNFKQVNDLHGHAAG 272
            ++  L A D LTGL NRR     A   +          L LID+D+FK++ND HGHAAG
Sbjct: 317 RQLEDLVATDELTGLFNRRHFMRMASRALEDLLPNRQHGLALIDLDHFKRINDRHGHAAG 376

Query: 273 DKLLEALSTLLREVLPDDALAARLGGDEFAILLPDGRQAQVAHIGEQLRQAFVHVTQTAV 332
           D++L+  + + R  L D  + AR GG+EF +LLP     Q+    E+LR AF       V
Sbjct: 377 DRVLQTFAAVARSCLRDGDVLARYGGEEFVLLLPHADAEQLESCCERLRLAFQQAEPVGV 436

Query: 333 ATPEAVSLSVGVSLFSTAALDLAGLMARADAALYEAKRAGRNQIVIT 379
            T + +SLSVG++L   A  DL   + RAD ALY AKR GRN+   T
Sbjct: 437 -TVDTLSLSVGMTLL-YADDDLDEALQRADQALYRAKRGGRNRCDAT 481


>PA1851 [T] COG2199 FOG Pae Pseudomonas aeruginosa
          Length = 401

 Score =  115 bits (288), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 119/202 (58%), Gaps = 12/202 (5%)

Query: 187 ISLVEGSMAVMLIALSMTGTERHRREERIGQ-----LAARDPLTGLLNRRALQARAPALI 241
           ++ +   + V++ + ++   +  +RE+ +G+     +A +D LTGL+NRR  +  A   +
Sbjct: 193 LNTLYNGLVVLICSFALYLQDYAQREQFLGRRLLGMMAEQDSLTGLVNRRYYELLAQRAL 252

Query: 242 AQASQAHPG-ALLLIDIDNFKQVNDLHGHAAGDKLLEALSTLLRE--VLPDDALAARLGG 298
            Q ++   G AL+L+D+D+FK  ND +GH AGD  L  L  +LR+    P D +AARLGG
Sbjct: 253 EQGAREEKGVALILVDVDDFKAYNDHYGHPAGDAALRQLGVVLRQGARRPLD-IAARLGG 311

Query: 299 DEFAILLPDGRQAQVAHIGEQLRQAF--VHVTQTAVATPEAVSLSVGVSLFSTAALDLAG 356
           +EFA+LL D  +     I E+LRQA   + +     +    +++S+GV+ +ST+ + L  
Sbjct: 312 EEFAVLLYDSEEGNTLAIAERLRQAVEALGIEHLGSSAGPCLTISLGVA-YSTSGMGLDA 370

Query: 357 LMARADAALYEAKRAGRNQIVI 378
           L   AD ALYEAK AGRN + +
Sbjct: 371 LYREADRALYEAKDAGRNAVRV 392


>aq_035_2 [T] COG2199 FOG Aae Aquifex aeolicus
          Length = 251

 Score =  115 bits (288), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 97/167 (58%), Gaps = 9/167 (5%)

Query: 217 QLAARDPLTGLLNRRALQARAPALIAQASQ-AHPGALLLIDIDNFKQVNDLHGHAAGDKL 275
           ++A  DPLTGL NRR     A   +A+A +  +  ++L+IDIDNFK++ND +GH  GD +
Sbjct: 82  RMALTDPLTGLYNRRVFTEMAEKELAKAKRYGYNFSILMIDIDNFKKINDTYGHDVGDLV 141

Query: 276 LEALSTLLREVLPDDALAARLGGDEFAILLPDGRQAQVAHIGEQLRQAFVHVTQTAVATP 335
           L+ +S +L+  +    L AR GG+EF ++L +          EQLR+    + QT +  P
Sbjct: 142 LKKISEILKRNVRGADLVARFGGEEFIVMLSNTNLNGAVKKAEQLRRM---IEQTPIELP 198

Query: 336 EA----VSLSVGVSLFSTAALDLAGLMARADAALYEAKRAGRNQIVI 378
                 V++S+GVS +      L  L+  AD ALYEAKR G+N++ +
Sbjct: 199 NGEKLRVTVSIGVSTYR-GHESLEELIKEADQALYEAKRKGKNRVEV 244