BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0507.p (296 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1126 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 159 9e-39 AGl1152 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 147 2e-35 AGl567 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 143 4e-34 RSp1110 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 142 9e-34 PA3124 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 138 1e-32 >RSp1126 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 323 Score = 159 bits (401), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 91/295 (30%), Positives = 152/295 (51%), Gaps = 3/295 (1%) Query: 2 LNRLEMLRIFCAAADTGSFKDAAIRLGISPQAVTRAIQELERLQGEMLFHRNTRQVRITS 61 +N L + F A + GS + AA G++PQA ++A+ +LE G L HR TR + +T Sbjct: 3 INELRAIATFAKAVELGSIRRAAAAQGVTPQAASQALAQLEEHLGVRLLHRTTRSLALTD 62 Query: 62 FGEALAERARASLRDLDGLFETDTASPADEMSGLVRLAAPSSLGRSRLLPIVERLAQAHP 121 G+ E A+ +L LD S DE++G +R+ P S L+P+++ + +P Sbjct: 63 EGQRFLEAAQPALAALDRALSQARES-KDEIAGPLRIVGPKSSFAPILMPVIDAFCRQYP 121 Query: 122 GLRFDLRLTDQRADVVGEKIDIGIRVGTVPDNRFVVRRLGKVRFHVVATPRFLRRHGTPE 181 ++ D++L D +++ V +++D+G R+G PD + RRL V+ + A P +L +HG P+ Sbjct: 122 QVQPDVQLDDGKSNWVLDRVDVGFRIGASPDEGVIARRLFPVQLMICAAPSYLEQHGAPK 181 Query: 182 DTEALRALPCTAMLDRGTGRPWPWLFAQENQWMADHAR--FLCDDSEGEYLLVRSGVAIG 239 + L C+A T + PW + + + H F +D+E E V +G IG Sbjct: 182 SLDELATHRCSAFRHPATDQVLPWYLNIDGEIVHRHVSPTFSTNDTELELQAVLAGQVIG 241 Query: 240 QIAGFLCEDDIAAGRLVPVMTDHEPDPWDMYLYRPQRGPVPPRLRLVFDTLVREF 294 Q+A I AGRLVP++ H D ++LY R P R+R D +++ Sbjct: 242 QVANLAAVTHIRAGRLVPLLLQHMSDHIGVHLYYGSRTAQPRRVRAFIDLAIQQL 296 >AGl1152 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 336 Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/255 (34%), Positives = 132/255 (51%), Gaps = 4/255 (1%) Query: 11 FCAAADTGSFKDAAIRLGISPQAVTRAIQELERLQGEMLFHRNTRQVRITSFGEALAERA 70 F A+ GS +AA+ L + ++RAI LE G L R TR++ +T G A E+A Sbjct: 51 FIIVAEKGSMTEAAVALATTASVLSRAITRLETRLGAQLMRRTTRRLNLTDEGRAYLEQA 110 Query: 71 RASLRDLDGLFETDTASPADEMSGLVRLAAPSSLGRSRLLPIVERLAQAHPGLRFDLRLT 130 RA+ +D ++G VR++ P++ G RL ++ER QA+P ++ +L +T Sbjct: 111 RAAFSMIDDAERAIQGPTGASLTGHVRISVPTTYGHHRLPAMLERFMQAYPEVQIELSIT 170 Query: 131 DQRADVVGEKIDIGIRVGTVPDNRFVVRRLGKVRFHVVATPRFLRRHGTPEDTEALRALP 190 ++ D+V E D+ IR+G +PD+ V R+L +VA P +L R G P+D E L Sbjct: 171 NRNVDLVAEGYDLAIRLGPLPDSGLVARKLEDASLRLVAAPHYLERAGMPQDVEDLAEHQ 230 Query: 191 CTAMLDRGTGRPWPWLFAQENQ---WMADHARFLCDDSEGEYLLVRSGVAIGQIAGFLCE 247 C + TGR PWLF + + W + DD G L SG+ I QI F+ Sbjct: 231 CLPFVMPSTGRCAPWLFHVDGRDLDWTPPGRIQVFDDVLGVVSLAESGLGICQIYDFIIR 290 Query: 248 DDIAAGRLVPVMTDH 262 D + GRLV V+ DH Sbjct: 291 DRVKEGRLVEVL-DH 304 >AGl567 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 301 Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 145/292 (49%), Gaps = 6/292 (2%) Query: 2 LNRLEMLRIFCAAADTGSFKDAAIRLGISPQAVTRAIQELERLQGEMLFHRNTRQVRITS 61 +NR + IF + G F AA ++P AV++ I LE G L +R+TRQ++IT Sbjct: 6 INRAGEMEIFVRVVELGGFSRAAAAANMTPSAVSKLIARLESRLGARLLNRSTRQLQITP 65 Query: 62 FGEALAERARASLRDLDGLFETDTASPADEMS-GLVRLAAPSSLGRSRLLPIVERLAQAH 120 G A ERA L DL+ E + A+ E G VR+ +S L PI+ R H Sbjct: 66 EGCAFYERATRILADLE---EAERAAGERERPIGRVRINTSASYATHILAPILPRFLALH 122 Query: 121 PGLRFDLRLTDQRADVVGEKIDIGIRVGTVPDNRFVVRRLGKVRFHVVATPRFLRRHGTP 180 P + D+ TD D++ E++D+ +R G + + V R+LG+ R + A P +L+R G P Sbjct: 123 PEITLDIVQTDLVVDLLAERMDVAVRAGPLKSSSLVARKLGETRMVIAAAPDYLKRCGVP 182 Query: 181 EDTEALRALPCTAMLDRGTGRPWPWLFAQENQWMADHARFLCDDSEGEYLLVRSGVAIGQ 240 + L C A+ + WP + + R D EG L +GV + + Sbjct: 183 QTISDLEGHNCLALGYARSIDGWPLQDGGKTVVIPATGRVQVSDGEGLRRLALAGVGLVR 242 Query: 241 IAGFLCEDDIAAGRLVPVMTDHEPDPWDMY--LYRPQRGPVPPRLRLVFDTL 290 +A F +DIAAGRLV V+ + + + +Y QRGP+P R+R + D L Sbjct: 243 LAAFTIREDIAAGRLVSVLDHLDTGETETFHAVYVGQRGPLPSRIRALLDFL 294 >RSp1110 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 315 Score = 142 bits (358), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 149/299 (49%), Gaps = 7/299 (2%) Query: 2 LNRLEMLRIFCAAADTGSFKDAAIRLGISPQAVTRAIQELERLQGEMLFHRNTRQVRITS 61 ++RL+ +++F + SF AA L + VT +Q LE G L HR TR+V +T+ Sbjct: 1 MDRLQAMQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTA 60 Query: 62 FGEALAERARASLRDLDGLFETDTA--SPADEMSGLVRLAAPSSLGRSRLLPIVERLAQA 119 G A ER L DL+ ET+ A A G +R+ P S+G+ L+P + A Sbjct: 61 DGAAYYERCVRILGDLE---ETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHDA 117 Query: 120 HPGLRFDLRLTDQRADVVGEKIDIGIRVGTVPDNRFVVRRLGKVRFHVVATPRFLRRHGT 179 +PGL+ ++ ++D+ D+V E +D +RVG + D+ V RR+G++ A+P +L R+GT Sbjct: 118 YPGLQLEIGMSDRTVDLVQEGVDCAVRVGELQDSTLVARRIGQLSMVNCASPDYLERYGT 177 Query: 180 PEDTEALRALPCTAMLDRGTGRPWPWLFAQENQWMADHARFL--CDDSEGEYLLVRSGVA 237 P E L+ GR W F + Q R L +D+E G+ Sbjct: 178 PRSLEDLQDHIAVNYFSPRNGRRMDWDFVIDGQKQIHKVRSLVSVNDAESAMACALHGLG 237 Query: 238 IGQIAGFLCEDDIAAGRLVPVMTDHEPDPWDMYLYRPQRGPVPPRLRLVFDTLVREFAE 296 + Q A L + + +G+LV V+ D+ +P + + P + P++R+ D + FA+ Sbjct: 238 LLQTARLLAYEHLQSGQLVEVLPDYISEPLPVSVIYPHNRHLSPKVRVFVDWVAMLFAD 296 >PA3124 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 303 Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 93/293 (31%), Positives = 143/293 (48%), Gaps = 8/293 (2%) Query: 2 LNRLEMLRIFCAAADTGSFKDAAIRLGISPQAVTRAIQELERLQGEMLFHRNTRQVRITS 61 +NR L +F ++G F AA R G++P AV++ I LE+ G L +R+TRQ+++T Sbjct: 6 VNRSGELEVFARVVESGGFSAAARRCGMTPSAVSKLITRLEQRLGTRLLNRSTRQLQLTP 65 Query: 62 FGEALAERARASLRDLDGL--FETDTASPADEMSGLVRLAAPSSLGRSRLLPIVERLAQA 119 G A ER L DL+ ++ A+P G +R+ A G LLP+V Sbjct: 66 EGCAFYERGVRILADLEEAERCASENAAP----RGRLRVNANVPFGHHFLLPLVPEFLAQ 121 Query: 120 HPGLRFDLRLTDQRADVVGEKIDIGIRVGTVPDNRFVVRRLGKVRFHVVATPRFLRRHGT 179 HP + D+ LTD+ D++ ++ D+ +R G + + V R+LG R +V P +L RHG Sbjct: 122 HPEVTLDIVLTDEVVDILEQRTDVAVRAGPLKSSSLVARKLGSTRMLIVGAPAYLARHGM 181 Query: 180 PEDTEALRALPCTAMLDRGTGRPWPWLFAQENQWMADHARFLCDDSEGEYLLVRSGVAIG 239 P +AL T WP A E + D E L +G+ + Sbjct: 182 PATPQALLGHNRLGANYVRTRSGWPLRDAGEELVVPLSGNAQASDGEALRRLAVAGLGLA 241 Query: 240 QIAGFLCEDDIAAGRLVPVMTDHEPDPWD--MYLYRPQRGPVPPRLRLVFDTL 290 ++A F +DIAAGRL+PV+ + P + +Y Q G +P R+R D L Sbjct: 242 RLAAFQVREDIAAGRLIPVLEAYNPGDLEEVHAVYVGQGGYLPLRVRAFLDFL 294